duncanca / mosaik-aligner

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MosaikTools compilation error #73

Closed GoogleCodeExporter closed 8 years ago

GoogleCodeExporter commented 8 years ago
What steps will reproduce the problem?
1.  Use a x86_64 machine running openSUSE 11.3
2.  Download and untar the newest Mosaik-1.1.0018-Linux-x64.tar.bz2
3.  go to MosaikTools/c++.  type 'make'

What is the expected output? What do you see instead?
I expected to see compilation of MosaikTools. Instead I saw
g++  -Wall -O3  -c -o MosaikConversionMain.o MosaikConversionMain.cpp
In file included from MosaikConversionMain.cpp:14:0:
MosaikAlignment.h:368:3: error: âuint64_tâ does not name a type
MosaikAlignment.h: In constructor 
âMosaik::ReferenceSequence::ReferenceSequence()â:
MosaikAlignment.h:381:6: error: class âMosaik::ReferenceSequenceâ does not 
have any field named âNumAlignedâ
MosaikAlignment.h: At global scope:
MosaikAlignment.h:405:3: error: âuint64_tâ does not name a type
MosaikAlignment.h:407:3: error: âuint64_tâ does not name a type
...............

What version of the product are you using? On what operating system?
Mosaik-1.1.0018-Linux-x64.tar.bz2   Opensuse 11.3

Please provide any additional information below.
The same package compiled find under RedHat. Maybe some system-dependent issue?
Thanks a lot!

Original issue reported on code.google.com by piconano...@gmail.com on 1 Nov 2010 at 10:34

GoogleCodeExporter commented 8 years ago
Hi there,

Please try to include two more libraries in "MosaikAlignment.h".

#include <stdint.h>
#include <stdio.h>

Original comment by WanPing....@gmail.com on 1 Nov 2010 at 10:58

GoogleCodeExporter commented 8 years ago

Original comment by WanPing....@gmail.com on 4 Nov 2010 at 8:31