Small bug in velveth parameters

dzerbino / velvet

Short read de novo assembler using de Bruijn graphs, as published in: D.R. Zerbino and E. Birney. 2008. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Research, 18: 821-829

https://europepmc.org/article/pmc/2336801

GNU General Public License v2.0

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Small bug in velveth parameters #22

Closed maasha closed 11 years ago

maasha commented 11 years ago

Running velveth Test/ 49,51,2 (...)

I would expect the directories:

Test/_49 Test/_51

But I only see

Test/_49

dzerbino commented 11 years ago

Hello Maasha,

no, the second bound is exclusive, so it stops < 51. The reason for this is in case the upper bound is an even number, the behaviour is well defined.

Regards,

Daniel