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dzerbino / velvet

Short read de novo assembler using de Bruijn graphs, as published in: D.R. Zerbino and E. Birney. 2008. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Research, 18: 821-829
https://europepmc.org/article/pmc/2336801
GNU General Public License v2.0
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readme

README.TXT

VELVET SOURCE March 28 2008 Daniel Zerbino

NOTE: The PDF manual in this directory contains all the information contained in this text file, plus much more!

SUMMARY

  • A/ REQUIREMENTS
  • B/ COMPILING INSTRUCTIONS
  • C/ WHERE IS THE MANUAL?

A/ REQUIREMENTS

Velvet should function on any standard 64bit Linux environment with

gcc. A good amount of physical memory (12GB to start with, more is no luxury) is recommended.

B/ COMPILING INSTRUCTIONS

Normally, with a GNU environment, just type:

make

For colorspace Velvet replace that command with

make color

Otherwise compile each *.c file separately, then execute the default instructions at the top of Makefile.

C/ WHERE IS THE MANUAL?

If you cannot find the PDF manual in the source directory (probably because you downloaded Velvet through git), you can simply compile it:

make doc