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dzerbino / velvet

Short read de novo assembler using de Bruijn graphs, as published in: D.R. Zerbino and E. Birney. 2008. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Research, 18: 821-829
https://europepmc.org/article/pmc/2336801
GNU General Public License v2.0
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cannot run velvet (1.2.10) #47

Closed memaMJ closed 3 years ago

memaMJ commented 4 years ago

Hello, velveth out_data_35 35 -fastq.gz -shortPaired -separate SRR292770_1.fastq.gz SRR292770_2.fastq.gz I run the following command but it did not work..... and I got this message ""-bash: $: command not found""

I fix it to be > ./velveth out_data_35 35 -fastq.gz -shortPaired -separate SRR292770_1.fastq.gz SRR292770_2.fastq.gz then I got " -bash: out_data_35: command not found "

am not sure how to fix this and run the Velveth software..

kindly help me out ... what should I do ?

dzerbino commented 3 years ago

Hello @memaMJ ,

Apologies, I had totally missed this ticket.

This appears to be an issue with your bash settings, I'm afraid I cannot diagnose it.

Best regards,

Daniel