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eQTL-Catalogue
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eQTL-Catalogue-resources
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API data limit
#43
VitorAguiar
opened
1 month ago
0
Gene level threshold
#42
Vibha-Acharya
closed
2 days ago
2
feat: add `study_type` to study metadata
#41
ireneisdoomed
closed
3 months ago
1
feat: add literature reference to study metadata
#40
ireneisdoomed
closed
5 months ago
1
Potential misspecification of tissue label in meta data for Schmiedel et al data
#39
VitorAguiar
closed
5 months ago
1
Unable to retrieve summary stats for colocalization from new catalogue release.
#38
VitorAguiar
opened
8 months ago
0
how do you get SORT1 position is 109274570
#37
crhywun
closed
10 months ago
1
Update Jerber and Nathan IDs. Add Cytoimmgen IDs.
#36
peepkolberg
closed
11 months ago
0
Request for Information on sQTL "*.all.tsv.gz" Download Locations
#35
yangchuhua
closed
11 months ago
4
range 8:127002451-129002451 not present in QTD000344.cc.tsv.gz
#34
figueredoj
closed
1 year ago
0
Inconsistency between new data and the ones in manuscript_plot_updates branch
#33
Ojami
closed
1 year ago
4
a dictionary between old biosample IDs and new QTDs
#32
aitgon
closed
1 year ago
0
add credible set and lbf ftp paths
#31
juhis
closed
1 year ago
0
Return lbf_variable for use with coloc v5
#29
jdblischak
closed
2 years ago
2
Human Kidney eQTL Atlas
#28
Shicheng-Guo
closed
2 years ago
1
eQTL_Catalogue.fetch: pre-filter by pvalue?
#27
paul-shannon
closed
1 year ago
1
GTEx sample size in tabix_ftp_paths.tsv is different from gtexportal
#26
mhaiyue
closed
1 year ago
2
10 sec time out when accessing tabix data via ftp
#25
AMCalejandro
closed
10 months ago
1
Unable to ftp get the tx (transcription usage) data
#24
AMCalejandro
closed
10 months ago
1
Changing method to detect null data frames
#23
AMCalejandro
opened
2 years ago
0
eQTL R API use case example error
#22
gabraham
closed
1 year ago
1
dataset 1: N contains missing values
#21
vmulcahy
closed
2 years ago
0
dominant and recessive model for eQTL
#18
Shicheng-Guo
closed
2 years ago
1
Normal/healthy tissues/dataset in eQTL-catalog as well as scRNA-seq dataset
#17
Shicheng-Guo
closed
3 years ago
1
expression data of eQTL catalog
#16
Shicheng-Guo
closed
3 years ago
2
Tabix Issue For Accessing Specific Regions in the Files
#15
maegsul
closed
3 years ago
2
conflicted results within same file `Quach_2016_txrev_monocyte_R848`
#14
Shicheng-Guo
closed
3 years ago
4
Ontology
#13
kerimoff
closed
3 years ago
0
duplicated lines in `van_de_Bunt_2015_txrev_pancreatic_islet.all.tsv.gz`
#12
Shicheng-Guo
closed
2 years ago
2
multiple different beta for same GenexSNP pair
#11
Shicheng-Guo
closed
3 years ago
1
No download button in `https://elixir.ut.ee/eqtl/?gene_name=KRAS`
#10
Shicheng-Guo
closed
3 years ago
1
tabix index to downloaded data
#9
Shicheng-Guo
closed
3 years ago
1
md5sum check to eQTL data downloaded from `ftp://ftp.ebi.ac.uk/pub/databases/spot/eQTL/csv/`
#8
Shicheng-Guo
closed
3 years ago
3
GTEx-V7 and GTEx-V8 in eQTL-Catalogue
#7
Shicheng-Guo
closed
2 years ago
2
changed ontology related column names
#6
kerimoff
closed
3 years ago
0
added GTExV7 and FUSION samples sizes and FTP paths
#5
kerimoff
closed
3 years ago
0
Unable to fetch data from GWAS Catalog
#3
marynias
closed
2 years ago
7
eQTL tabix tables out of sync with files on FTP
#2
hyjkim
closed
4 years ago
2
Tabix headers
#1
bschilder
closed
4 years ago
2