EANBiT 2020 Virtual Residential Training Mini-Projects
Mini-projects for the residential training. As part of the EANBiT Residential training 2020, you will collaboratively work on mini-projects in groups of at least 5.
Projects
- Project 1: Reproduce Published ONT pipeline
- Project 2: Genomic characterisation of Escherichia coli isolates from rural drinking water systems
- Project 3: Interrogating public datasets and paths to results on Covid19 in East Africa
- Project 4: Origin of antimicrobial resistance Escherichia coli isolates in a Pastoralist Community using Whole genome sequences data
- Project 5: RNA-Seq data processing and gene expression analysis workflow
- Project 6: Variant calling from NGS data of two accessions of Lablab purpureus
Expected
- Work collaboratively on the project. In your report, you need to state the role played by each group member.
- Collaborate via Git & GitHub, making use of the Git Workflow.
- Assign tasks to group members using GitHub issues and learn from each other. Every member of the group must be knowledgeable of the work of the whole group.
- Your submission should be accompanied by a reproducible workflow implemented using the workflow languages you were taught during the training.
- Document your scripts in a nice and informative way. Your scripts, programs, workflows, etc, will be reviewed as a critical part of the project assessment.
- Your writeup should be complete with visualizations.