eastgenomics egg5_dias_CEN_config issues

eastgenomics / egg5_dias_CEN_config

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Update to use cen_vep_config_v1.1.19

#83 pofuoku closed 2 weeks ago
0
Check GitHub Actions workflow re-runs CNV calling when RUN_CNV_CALLING set to True

#82 rklocke closed 3 weeks ago
4
Test GitHub Actions workflow runs but exits if multiple JSON files changed

#81 rklocke closed 4 weeks ago
1
Test GitHub Actions workflow does not run if only README changed

#80 rklocke closed 4 weeks ago
0
PR to test GitHub Actions workflow #2

#79 rklocke closed 4 weeks ago
8
PR to test GitHub Actions workflow

#78 rklocke closed 1 month ago
5
Increment version of config with correct file IDs

#77 cnascim1 closed 1 month ago
0
Increment version of config with correct file IDs

#76 cnascim1 closed 1 month ago
2
Updated VEP config in rpt

#75 cnascim1 closed 1 month ago
0
v3.1.7

#74 cnascim1 closed 1 month ago
0
Update CEN VEP file to v1.1.7

#73 fletchercr closed 2 months ago
0
Update to include cen_vep_config_v1.1.17.json

#72 Arun-bioinformatics closed 2 months ago
0
Update to include cen_vep_config_v1.1.17.json

#71 Arun-bioinformatics closed 2 months ago
1
v3.1.5

#70 growland2 closed 2 months ago
1
v3.1.5

#69 growland2 closed 3 months ago
1
v3.1.4

#68 growland2 closed 3 months ago
0
v3.1.3

#67 growland2 closed 4 months ago
1
v3.1.3 - updated to use latest vep config

#66 growland2 closed 4 months ago
1
v3.1.3 fix optimised filter string

#65 growland2 closed 6 months ago
0
v3.1.2

#64 growland2 closed 6 months ago
0
v3.1.2

#63 growland2 closed 6 months ago
0
v3.1.1

#62 growland2 closed 6 months ago
0
v3.1.1

#61 growland2 closed 6 months ago
0
v3.1.1

#60 growland2 closed 6 months ago
1
mosaics generate_bed_athena string inputs are missing from v3.0.4

#59 chrispyatt opened 7 months ago
1
Di 824 v3.0.4

#58 kjwinfield closed 7 months ago
0
exons file names are ambiguous

#57 kjwinfield closed 6 months ago
0
DI-700 v3.1.0

#56 rklocke closed 7 months ago
0
V3.1.0 changes to DI-700_v3.1.0

#55 rklocke closed 7 months ago
0
Update_egg5_dias_config_CEN_v3.0.3

#54 Arun-bioinformatics closed 8 months ago
0
CEN config version in config in github doesn't match what is in DNAnexus

#53 Addy81 closed 8 months ago
1
Add url duration field as artemis input

#52 kjwinfield closed 9 months ago
0
update egg5 dias config cen

#51 wintun12 closed 9 months ago
0
DI-623 3.0.0

#50 kjwinfield closed 10 months ago
0
Updated CEN VEP config to v1.1.9

#49 fletchercr closed 10 months ago
0
Restore gnomad nhomalt in reports

#48 mattgarner closed 10 months ago
0
Update to reference latest VEP CEN config

#47 growland2 closed 11 months ago
0
fix mosaics search location

#46 chrispyatt closed 11 months ago
0
fix CSQ

#45 chrispyatt closed 12 months ago
1
Di 546 v2.3.1

#44 chrispyatt closed 12 months ago
1
Update CEN VEP config and GATKgCNV_call app

#43 fletchercr closed 1 year ago
0
add athena thresholds

#42 chrispyatt closed 1 year ago
0
Set ACMG field for CNV generate variant workbook to True

#41 fletchercr closed 1 year ago
0
Update and rename egg5_config_v2.1.0.py to egg5_config_v2.2.0.py

#40 chrispyatt closed 1 year ago
0
Add --acmg flag to generate workbooks for CNV reports

#39 Addy81 closed 1 year ago
1
Di 367 v2.1.0

#38 kjwinfield closed 1 year ago
0
Ng 240 mosaics

#37 chrispyatt closed 1 year ago
0
Update CEN VEP config v1.1.6

#36 fletchercr closed 1 year ago
0
Update vep config to v1.1.6 to include Clinvar version 20230819

#35 fletchercr closed 1 year ago
0
Ng 220 v2.0.3

#34 spaul91 closed 1 year ago
1