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ebecht
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infinityFlow
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Minimum Input cell number
#31
GalliES
opened
1 month ago
1
weird result-imputated XGBoost value are not correlated with it's real value in corresponding sample at all!
#30
RayRay-23
opened
2 months ago
1
Merge remote-tracking branch 'origin/master' into devel
#29
ebecht
closed
6 months ago
0
"Plotting" step during infinity_flow() crashed and only produced raw but not background-subtracted outputs?
#28
denvercal1234GitHub
closed
1 year ago
1
Validation Strategies for Predicted Results
#27
Wei-Che-Chang
opened
1 year ago
0
Do we need to remove the "experimentally measured" PE column before clustering?
#26
denvercal1234GitHub
opened
1 year ago
0
Is it appropriate to use markers with expression predicted by one model together with markers predicted by another model in the same clustering?
#25
denvercal1234GitHub
opened
1 year ago
0
Able to separate the training from the imputation?
#24
denvercal1234GitHub
opened
1 year ago
0
Advice to tune the hyperparameters in extra_args_regression_params in training SVM, NN and XGBoost models
#23
denvercal1234GitHub
opened
1 year ago
0
How to adjust transformation if it was not transformed properly during infinity_flow()?
#22
denvercal1234GitHub
opened
1 year ago
2
Running NN: Error #15: Initializing libomp.dylib, but found libomp.dylib already initialized.
#21
denvercal1234GitHub
closed
1 year ago
1
Warning: Some data values of 'CD49E.LASSO2' channel exceed its $PnR value 175864747 and will be truncated! To avoid truncation, either fix $PnR before generating FCS or set 'truncate_max_range = FALSE'
#20
denvercal1234GitHub
closed
1 year ago
11
Marker_XGBoost_bgc_intensity on UMAP plots
#19
Cicevk
opened
1 year ago
8
How to check the accuracy of logicle transformation before proceeding with infinity_flow?
#18
denvercal1234GitHub
closed
1 year ago
3
Do I need to transform the output FCS files before clustering downstream of infinity_flow()?
#17
denvercal1234GitHub
closed
1 year ago
7
Error in xp[, x] : subscript out of bounds at logicle-transforming the data - Backbone
#16
denvercal1234GitHub
closed
1 year ago
1
Error in logicle_transform
#15
Cicevk
opened
1 year ago
2
How to obtain UMAP coordinates and cluster ID per cell?
#14
denvercal1234GitHub
opened
1 year ago
5
Error in using GPU Tensorflow Mac M1 when doing neural network model
#13
denvercal1234GitHub
closed
1 year ago
4
How to specify autofluorescence channel in place of isotype control in annotation.txt, backbone_specification, and infinity_flow()?
#12
denvercal1234GitHub
closed
1 year ago
3
Should we exclude FCS files (i.e., exploratory PE marker wells) that have too high PE signals in infinityFlow model?
#11
denvercal1234GitHub
closed
1 year ago
2
infinity_flow error
#10
SmithMaxine
closed
1 year ago
3
error in annotation and Isotype argument
#9
yaozhan2022
closed
1 year ago
2
Question about backbone selection and error in dimnames(x)
#8
GRT-coder
closed
1 year ago
1
Increase imputed events
#7
GarrettCollett
opened
2 years ago
1
Data transformation
#6
GeorgeAlehandro
opened
2 years ago
3
Cannot allocate of vector of size ...
#5
ebecht
opened
2 years ago
3
Questions/improvements
#4
jacobpwagner
opened
2 years ago
3
Background correction error
#3
sschepanski
closed
2 years ago
4
Running multiple imputations with same temp folder appends files
#2
NKInstinct
closed
3 years ago
3
Applicability to other data types?
#1
83years
closed
3 years ago
4