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ebi-gene-expression-group
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scanpy-scripts
Scripts for using scanpy
Apache License 2.0
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Add batch correction methods, Scanpy 1.6-specific things
#86
pinin4fjords
closed
4 years ago
2
scanpy-scripts-tests.sh does not exist
#85
mathog
closed
4 years ago
2
Update for Scanpy 1.5.1
#84
pinin4fjords
closed
4 years ago
1
Update dependencies
#83
pinin4fjords
closed
4 years ago
3
Add harmony integration to CLI
#82
pinin4fjords
closed
4 years ago
1
scanpy-scripts will not install, conflicting scipy version requirements
#81
mathog
closed
4 years ago
9
scanpy-scripts related warnings when scanpy is updated
#80
mathog
closed
4 years ago
6
[WIP] add batch correction
#79
racoonrocket
closed
4 years ago
1
Bump n_comps down to match low cell numbers
#78
pinin4fjords
closed
4 years ago
1
Error where n_comps > n_cells
#77
pinin4fjords
closed
4 years ago
2
Automatically reset PCs based on var size
#76
hewgreen
closed
7 months ago
12
Feature/fix svg defaults
#75
pinin4fjords
closed
4 years ago
1
Pass gene-symbols to embedding plot
#74
pinin4fjords
closed
4 years ago
1
Allow filtering of boolean variables as categorical
#73
pinin4fjords
closed
4 years ago
2
Always calculate basic stats before filtering
#72
nh3
closed
4 years ago
2
Feature/travis deploy
#71
pinin4fjords
closed
4 years ago
2
Extend negative filtering to genes and other fixes
#70
nh3
closed
4 years ago
2
Feature/filtering tweaks
#69
pinin4fjords
closed
4 years ago
2
Feature/negative filter
#68
nh3
closed
4 years ago
2
[WIP] Proposal to move certain observations generation to read step
#67
pcm32
closed
4 years ago
12
Feature/merge rgg
#66
pinin4fjords
closed
4 years ago
5
Add heatmap plotting and some associated structural changes
#65
pinin4fjords
closed
4 years ago
1
Feature/matrixplots
#64
pinin4fjords
closed
4 years ago
3
Feature/dotplots
#63
pinin4fjords
closed
4 years ago
4
Feature/stacked violins
#62
pinin4fjords
closed
4 years ago
6
Make log tranform optional on normalisation
#61
pinin4fjords
closed
4 years ago
4
h5py error on producing Loom file after FindMarkerGenes
#60
pcm32
closed
4 years ago
4
Allow specifying cell/gene prefix for all filtering attributes
#59
nh3
closed
4 years ago
3
UMAP broken
#58
pcm32
closed
4 years ago
4
Missing tsne multicore or not being able to load it
#57
pcm32
closed
3 years ago
2
Feature/loom3
#56
nh3
closed
4 years ago
1
UTF-8 error when using scanpy-scripts biocontainer
#55
kmussar
closed
4 years ago
4
Allow passing additional arguments to sc.read_loom()
#54
nh3
closed
5 years ago
0
Hotfix/fiilter
#53
nh3
closed
5 years ago
0
Hotfix/fiilter
#52
nh3
closed
5 years ago
1
Feature/export cluster
#51
nh3
closed
5 years ago
0
Release/0.2.4.post1
#50
nh3
closed
5 years ago
0
Add "--edge-width-scale"
#49
nh3
closed
5 years ago
0
Feature/plot paga
#48
nh3
closed
5 years ago
0
Add plot_paga
#47
nh3
closed
5 years ago
1
0.0.5: read_10x var names not being picked up
#46
pcm32
closed
5 years ago
1
Release/0.2.0
#45
nh3
closed
5 years ago
0
Add loom support
#44
nh3
closed
5 years ago
3
Update README.md
#43
nh3
closed
5 years ago
1
Improve handling of slots and bugfix
#42
nh3
closed
5 years ago
2
Feature/function improvements
#41
nh3
closed
5 years ago
4
v0.2.x new command interface refactor
#40
nh3
closed
5 years ago
4
[WIP] v0.2.x new command interface
#39
nh3
closed
5 years ago
1
[WIP] v0.2.x new command interface
#38
nh3
closed
5 years ago
1
Add loom support to v0.0.5
#37
nh3
closed
5 years ago
4
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