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ecell
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ecell4
An integrated software environment for multi-algorithm, multi-timescale, multi-spatial-representation simulation of various cellular phenomena
https://ecell4.e-cell.org/
GNU General Public License v3.0
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Error installation
#98
onurburakozdemir
closed
1 month ago
1
ecell4 1.2.0 does not work with ecell4_base 2.0.5
#97
kozo2
opened
3 years ago
1
AttributeError: 'ecell4_base.core.NetworkModel' object has no attribute 'is_static'
#96
kozo2
closed
3 years ago
1
name must be determined first
#95
kaizu
closed
4 years ago
0
Feature/pysb
#94
kaizu
closed
4 years ago
1
Return a figure without showing it
#93
kaizu
opened
4 years ago
0
cyjs doesn't properly work
#92
kaizu
opened
4 years ago
2
Return figure
#91
kaizu
opened
4 years ago
0
:bookmark: Bump version to 1.2.0b1
#90
kozo2
closed
4 years ago
0
Minor changes
#89
kaizu
closed
4 years ago
0
Plotting time series in 3D
#88
kaizu
opened
4 years ago
0
Add new dependencies
#87
kaizu
closed
4 years ago
0
Adapt to the latest pint
#86
kaizu
closed
4 years ago
0
Fix a critical mistake
#85
kaizu
closed
4 years ago
0
New interfaces
#84
kaizu
closed
4 years ago
0
A reaction between a 3d-diffusing molecle and 3d structure has the wrong dimensionality
#83
kaizu
closed
4 years ago
0
Use "ver or later" notation in install_requires
#82
kozo2
closed
4 years ago
0
Add extras_require to setup.py
#81
kozo2
closed
4 years ago
0
Move from TravisCI to GitHub Actions
#80
kozo2
closed
4 years ago
0
Create Action for PyPI publishing
#79
kozo2
closed
4 years ago
0
arXiv DataSource
#78
kaizu
opened
4 years ago
0
Enable observables in plotting.plot_number_observer
#77
kaizu
closed
4 years ago
0
#16 Enable to export the PySB Model roughly
#76
kaizu
closed
4 years ago
0
Interface2
#75
kaizu
closed
4 years ago
0
Interface
#74
kaizu
closed
4 years ago
0
Transition from setup.py to pyproject.toml
#73
kozo2
closed
4 years ago
1
Replacing GPL-2.0 to GPL-3.0
#72
kozo2
closed
4 years ago
2
Testing with sbml-test-suite
#71
kozo2
opened
4 years ago
0
Enable abs
#70
kaizu
closed
4 years ago
0
enable to show SGFRD world
#69
ToruNiina
closed
4 years ago
0
:green_heart: use conda-forge on travis
#68
ToruNiina
closed
4 years ago
0
:pencil2: fix typo
#67
ToruNiina
closed
4 years ago
0
📝 Update README for ecell4_base version 2.0.0
#65
kozo2
closed
4 years ago
0
Prepare for building conda package
#64
0ncorhynchus
closed
4 years ago
0
prelude
#63
kaizu
closed
4 years ago
0
Update ReactionRulePolicy
#62
kaizu
closed
4 years ago
0
Creating Conda package
#61
kozo2
closed
4 years ago
0
Enable to set ReactionRule's attributes
#60
kaizu
closed
4 years ago
1
Add tools for metabolic control analysis #57
#58
kaizu
closed
5 years ago
0
Add tools for metabolic control analysis
#57
kaizu
closed
5 years ago
1
Add a method to check units in a model
#56
kaizu
closed
5 years ago
0
Fix bugs
#55
kaizu
closed
5 years ago
0
can't load an sbml file
#54
ortega2247
closed
5 years ago
2
can't install ecell4 on Mac
#53
ortega2247
closed
5 years ago
2
ax.set_aspect('equal') doesn't work in the latest matplotlib
#52
kaizu
closed
5 years ago
1
installation problem
#51
KSimi7
closed
5 years ago
18
Fix some bugs
#50
kaizu
closed
5 years ago
0
Import data and fix some bugs
#49
kaizu
closed
5 years ago
0
Avoid importing all from a module
#48
kaizu
closed
5 years ago
0
Contact map visualization with cytoscape.js
#46
kozo2
closed
5 years ago
3
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