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ecell
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ecell4
An integrated software environment for multi-algorithm, multi-timescale, multi-spatial-representation simulation of various cellular phenomena
https://ecell4.e-cell.org/
GNU General Public License v3.0
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Result object for run_simulation
#11
kaizu
closed
4 years ago
1
Fix module names more
#10
kaizu
closed
5 years ago
0
Fix the module name
#9
kaizu
closed
5 years ago
0
Prepare CIs
#8
kaizu
opened
5 years ago
0
Version information is duplicated
#7
kaizu
closed
5 years ago
0
Update the warning message in unit
#6
kaizu
closed
4 years ago
1
Update README.md
#5
kaizu
closed
5 years ago
0
Rename modules
#4
kaizu
closed
5 years ago
0
Use ecell4_base
#3
kaizu
closed
5 years ago
0
SpatiocyteWorld.actual_volume changed its meaning
#2
kaizu
opened
5 years ago
0
azure_batch.py fails with pickle FileNotFoundError
#12
kozo2
closed
4 years ago
2
Add integration tests for spatiocyte
#1
0ncorhynchus
opened
6 years ago
0
Integration tests with Papermill
#66
kozo2
opened
6 years ago
0
Use DRMAA to interface with different resource management systems
#14
kozo2
opened
6 years ago
0
Enable to save an image in plot_world
#15
kaizu
opened
6 years ago
0
Support PySB
#16
kaizu
opened
6 years ago
5
Enable reducer in ensemble functions
#17
kaizu
opened
6 years ago
0
Refactor ensemble_simulations and run_* functions
#18
kaizu
closed
4 years ago
1
Enable to split species attribute definition
#19
kaizu
closed
4 years ago
5
Pipe to scopyon
#20
kaizu
closed
5 years ago
1
Adding meda-data column to Species latex table
#21
kozo2
opened
6 years ago
0
An unit of the kinetic rate constant on surface
#23
kaizu
closed
5 years ago
3
Prepare an example using the ensemble feature
#22
kaizu
closed
4 years ago
1
Adding Species attribute LaTeX table generate function to latex.py
#24
kozo2
opened
6 years ago
1
ExcludeReactants
#25
kaizu
opened
6 years ago
1
Association with COBRApy
#26
kaizu
opened
6 years ago
0
Enable to use virtualenv or pyenv in ensemble
#27
kaizu
opened
6 years ago
1
Use ConfigParser to set parameters for ensemble
#28
kaizu
closed
4 years ago
1
Abbreviations
#29
kaizu
opened
6 years ago
1
Refactor Python samples
#30
kaizu
opened
7 years ago
3
Simpler rule-based modeling
#31
kaizu
opened
7 years ago
1
Plot mean squre displacements with TrajectoryObserver
#32
kaizu
opened
7 years ago
0
Parameter optimization tools
#33
kaizu
opened
7 years ago
1
pytest for ecell4.datasource
#34
kozo2
opened
7 years ago
1
Support ipywidgets
#35
kaizu
opened
7 years ago
0
Complete the web site.
#59
kaizu
closed
4 years ago
2
Save species_attributes into a SBML file
#36
kaizu
opened
8 years ago
0
Refactor multiple plot functions
#37
kaizu
closed
4 years ago
1
Rule-based modeling for a Model with RateLaws
#38
kaizu
opened
8 years ago
0
Mathematical functions in rate laws cannot be pre-defined
#39
kaizu
opened
8 years ago
1
DataSource module for modeling in cooperation with databases
#40
kaizu
opened
8 years ago
2
Provide Session class for encapsulating a single simulation
#41
kaizu
closed
4 years ago
6
plotly.js support
#42
kozo2
closed
4 years ago
1
Jupyter notebook for metabolic profile visualization with Cytoscape
#43
kozo2
closed
4 years ago
2
Prepare an example reproducing a model by Rodríguez2006
#44
kozo2
closed
4 years ago
1
Garuda datasource support
#45
kozo2
opened
9 years ago
0
Contact map visualization with cytoscape.js
#47
kozo2
closed
4 years ago
3
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