edeno Jadhav-2016-Data-Analysis issues

edeno / Jadhav-2016-Data-Analysis

Code for analysis on data from Jadhav et al. 2016

GNU General Public License v3.0

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#129 edeno opened 6 years ago
0
Linear distance in linpos files is wrong

#128 edeno opened 6 years ago
0
Different LFP start times and number of samples for epoch in bond

#127 edeno closed 7 years ago
3
Inbound vs. Outbound, Early vs. Late fails in aggregation step because there are no ripples for certain sessions

#126 edeno closed 7 years ago
1
Research the average coherence difference reported in studies between areas

#125 edeno closed 7 years ago
4
Histogram of first window after ripple to examine variablity

#124 edeno closed 7 years ago
1
Cherry pick single ripple example and look at measures of directionality in that example

#123 edeno closed 7 years ago
0
Compare ripples originating from the animals position vs. away from the animal position

#122 edeno closed 7 years ago
0
Plot coherence phase delays

#121 edeno closed 7 years ago
0
Minimum phase decomposition isn't converging. Hitting max number of iterations first. Need to increase max?

#120 edeno closed 7 years ago
1
Threshold ripple decoding by 0.8 for spectral analysis?

#119 edeno closed 7 years ago
1
iCA1 coherence won't load after cluster job

#118 edeno closed 7 years ago
1
SVD is failing on canonical coherence for Animal HPc, Day 6, Epoch 4

#117 edeno closed 7 years ago
1
Use Long Tao's Ripple Detection method

#116 edeno opened 7 years ago
0
Use the complex coherency to average to look at phase consistency

#115 edeno closed 7 years ago
0
Compute Connectivity Measures/Power over entire session for baseline

#114 edeno closed 7 years ago
2
Fix normalization step in Canonical Coherence

#113 edeno closed 7 years ago
0
Decode Ripple events in PFC?

#112 edeno opened 7 years ago
0
t-SNE plot of electrode activity locked to ripple

#111 edeno closed 7 years ago
1
Histogram of phase delays instead of just average

#110 edeno closed 7 years ago
0
Turn ripple decoding code into a class?

#109 edeno closed 7 years ago
1
Save location of animal in Ripple Info data structure

#108 edeno closed 7 years ago
0
Only days 1-5 reflect learning, Days 6-8 introduce a new rotated track

#107 edeno opened 7 years ago
0
Beta band coherence might reflect sharp wave of ripple

#106 edeno closed 7 years ago
0
Subtract the ERP

#105 edeno closed 7 years ago
0
Save encoding model and state transitions for each epoch

#104 edeno opened 7 years ago
0
Double check "invalid value encountered in true_divide" warning

#103 edeno closed 7 years ago
0
What order should we use for the parametric spectral granger analysis?

#102 edeno closed 7 years ago
0
Plot ripple decoding stats

#101 edeno opened 7 years ago
1
Ripple Triggered Coherence Plots

#100 edeno closed 7 years ago
2
Does canonical group delay exist?

#99 edeno closed 7 years ago
0
Create notebook showing group delay with coherence thresholding on simulated data

#98 edeno closed 7 years ago
0
Implement clusterless decoding for use on the computing cluster

#97 edeno closed 7 years ago
0
Plot ripple-locked coherence averaged over epochs

#96 edeno closed 7 years ago
1
Plot baseline coherence

#95 edeno closed 7 years ago
1
Add number of pairs per group in coherence plots

#94 edeno closed 7 years ago
0
Add code for getting the group delay from significant coherence

#93 edeno closed 7 years ago
0
Add code for finding significant coherence

#92 edeno closed 7 years ago
0
Plot scatter plot of baseline coherence vs. ripple locked

#91 edeno closed 7 years ago
1
Plot time domain signals around ripple

#90 edeno closed 7 years ago
1
Plot power spectra of areas

#89 edeno closed 7 years ago
1
Double check ground process intensity

#88 edeno closed 7 years ago
0
Multi-taper smoothing affects group delay

#87 edeno closed 7 years ago
0
Cluster not running the correct version of the code

#86 edeno closed 7 years ago
1
Parallelize ripple decoding

#85 edeno closed 7 years ago
1
Report coherence or magnitude squared coherence?

#84 edeno closed 7 years ago
1
Compute canonical coherence group delay

#83 edeno closed 7 years ago
0
scipy.stats.norm.pdf is slow

#82 edeno closed 7 years ago
0
Double check the equation for the joint mark intensity

#81 edeno closed 7 years ago
0
Double check the concatenation of the ripple spikes

#80 edeno closed 7 years ago
0