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edzuf
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CrisprOpenDB
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IndexError: single positional indexer is out-of-bounds
#22
yqy6611
opened
8 months ago
0
I have around 300 phage genomes. and i wish to check the spacers in these many genomes. what should be the command line to execute the analysis.
#21
Thewhitewolf8
opened
1 year ago
1
create a customed spacer database
#20
Iris7788
opened
1 year ago
1
Output
#19
geboro
opened
2 years ago
0
Suggestion - Host lineage information
#18
aelbehery
opened
2 years ago
2
How to incorporate an additional CRISPR spacer database?
#17
ErnieHsieh
closed
2 years ago
1
How to get the spacer database?
#16
hannet91
closed
2 years ago
1
BLAST Database error: Error pre-fetching sequence data
#15
JSSaini
closed
1 year ago
1
question about the workflow of CrisprOpenDB
#14
mujiezhang
opened
3 years ago
0
how can I get the host information after running a local blast with the spacer db
#13
linxingchen
closed
2 years ago
1
call CRISPR spacers from user's own genomes and link virus to host
#12
liupfskygre
closed
2 years ago
2
conda_env_text_mac
#11
fgravey
opened
3 years ago
4
A subset of contigs did not run in multi-FASTA file
#10
anshulsinha1
opened
3 years ago
1
FileNotFoundError: [Errno 2] No such file or directory: 'blastn'
#9
linsalrob
closed
3 years ago
1
Index error
#8
jtvanleuven
closed
3 years ago
2
sqlite database link broken
#7
ryneches
closed
3 years ago
3
Installation and performance upgrade.
#6
plpla
closed
3 years ago
0
Supplementary files for data availability
#5
moiradion
closed
4 years ago
0
Code clean-up. Changed DB handling.
#4
plpla
closed
4 years ago
0
Reduced memory usage.
#3
plpla
closed
4 years ago
0
Optimized performances and fixed gap issue.
#2
plpla
closed
4 years ago
0
Added blast as aligner.
#1
plpla
closed
4 years ago
0