ekawaler pyQUILTS issues

ekawaler / pyQUILTS

Rebuilding QUILTS in Python.

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I used ensemble as the reference sequence, and the output of star's SJ.tab as the input, but I got this error. How should I resolve it?

#25 chongzhengxia opened 2 months ago
0
Error opening: /PUBLIC/home/xiachongzheng/GCA-neo/pyQUILTS-master/ref_pyQUILTS_genome/chr1.fa.cmp1

#24 chongzhengxia opened 2 months ago
0
Prepare updates

#23 snkeegan closed 4 months ago
0
added fixes to prepare_uniprot.py to better support the 'both' version flag and fixed some issues

#22 hguturu opened 3 years ago
2
read_chr_bed error

#21 rsalz opened 4 years ago
6
Running error

#20 xpgege closed 4 years ago
2
Running error

#19 xpgege closed 4 years ago
0
https://nyumc.box.com/v/quilts-sample-references not work

#18 XinpeiYi closed 4 years ago
2
New version of the code is not working

#17 gwajnberg closed 4 years ago
2
genome ref

#16 summerghw closed 4 years ago
2
Failing trypsin digestion

#15 gwajnberg opened 4 years ago
2
prepare_ensembl not working properly

#14 niradsp closed 4 years ago
1
how to get RNAseq somatic mutation ? if i work with cancer data i need somatic mutation.

#13 summerghw closed 5 years ago
1
What is required for a "reference proteome"?

#12 verheytb closed 5 years ago
2
QUILTS Version3 Output Examples and Key and how to cont "the RNA splice junctions not in RefSeq"

#11 pl618 closed 6 years ago
3
Index error in fusions.proteome.bed.dna file

#10 apuhegde closed 6 years ago
0
Undefined variable name bug

#9 apuhegde closed 6 years ago
0
ERROR with 'pyQUILTS/prepare_proteome/prepare_ensembl/prepare_ensembl.py'

#8 hmkim closed 6 years ago
2
Multiple occurrances of ValueError: invalid literal for int() with base 10: ''

#7 apuhegde closed 6 years ago
1
Key error when working with single VCF input (germline)

#6 apuhegde closed 6 years ago
1
modified original quilts.py code to 1) comment the shutil copy step…

#5 apuhegde closed 6 years ago
0
Key error during NSJ fasta generation

#4 apuhegde closed 6 years ago
1
Source not found for shutil.copy() function

#3 apuhegde closed 6 years ago
1
Trailing special characters in reference transcriptome file leading to errors

#2 apuhegde closed 6 years ago
2
Error parsing VCF file

#1 apuhegde closed 6 years ago
1