Biohackathon-projects-2020

This repository is meant for the participants of the BioHackathon hosted in Barcelona in Nov 2020 to share ideas, create issues, manage projects, publish materials, create code, etc.

Projects

• Project 1 Follow-up analysis on BioHackathon-Europe outcomes
• Project 2 Machine-Actionable Data Stewardship Wizard
• Project 3 ELIXIR Service Bundle for Epidemic Response
• Project 4 Unified Biological Dictionaries + PubDictionaries = a curator’s life dream
• Project 5 Detection of epimutations to improve the diagnosis of rare diseases
• Project 6 Improving BioHackrXiv.org
• Project 7 CNV detection software containerisation and benchmark
• Project 8 Integrating modelling services with the 3D-Beacons network
• Project 9 The Turing Way: A how-to guide to reproducible, ethical and inclusive data research
• Project 10 EDAM and Tool Information Profiles
• Project 11 bio.tools integration and sustainable development
• Project 12 “Federated” query by agents
• Project 13 Extension and Continuous Integration of Cheminformatics Resources and Applications
• Project 14 Exporting rich metadata and provenance from Galaxy using RO-Crate packaging.
• Project 15 FAIR4Software. Automated indicators and metrics measurement.
• Project 16 The ELIXIR Cloud & AAI Platform: Operationalising GA4GH Cloud standards
• Project 17 Improve the support of Common Workflow Language in Galaxy
• Project 18 Hardening and Testing Galaxy cluster support with BioContainer
• Project 19 Support tools for efficient FAIRification of Data Resources in life sciences
• Project 20 CAB: Computer Aided Biodiversity
• Project 21 Adoption of Software Management Plans (SMPs)
• Project 22 Federating Accessible InterMine Resources
• Project 23 Extending and implementing InterMine databases for ELIXIR nodes
• Project 24 Exploiting Bioschemas Markup in Community Registries
• Project 25 Federated Interoperable Annotated Variation Graphs
• Project 26 Sapporo WES as a Public Web Service
• Project 27 An interface between Galaxy and disease maps
• Project 28 Beacon for clinical and translational data’
• Project 29 Design of a modular learning path (curriculum) in Data Stewardship, Management and Analysis for the Life Sciences
• Project 30 Epidemiology and monitoring ontology for COVID-19
• Project 31 Deploying biocontainers in orchestration environments for life science research
• Project 32 User interface for plant experimental metadata management: EBI(DSP)-ISA-FAIRDOMHub/SEEK harmonization
• Project 33 Connecting molecular sequence to their voucher specimens
• Project 34 Development of a tool for mechanistic meta-analyses using COVID-19 available data as proof of concept
• Project 35 Knowledge graphs and Wikidata subsetting
• Project 36 Enabling interactive R analyses in the InterMine user interface
• Project 37 Accelerating integrated use of biomedical databases through semantic data modeling
• Project 38 panoptes: monitor computational workflows in real time
• Project 39 Unlock the value of your data computing at the edge
• Project 40 Creation of a cloud-native server instance that translates cancer graph variations into an OMOP compliant medical record format.
• Project 41 Further development of Service Bundle pilots and integration with the ELIXIR ecosystem

BioHackathon IP disclaimer

The BioHackathon Europe is organised and funded by the ELIXIR Hub and does not retain any license or any intellectual property rights over any Participant’s submission. ANY CODE DEVELOPED BY THE PARTICIPANTS SHALL BE OWNED BY THE PARTICIPANT(S) TOGETHER WITH THE CORRESPONDING INTELLECTUAL PROPERTY RIGHTS. Participants are responsible for their licence definition and complaint with any software dependency or third-party licences. Participants are responsible to manage the intellectual property rights of their projects. Participants confirm not to infringe the copyright of any third party. Participants hold the ELIXIR Hub harmless against all claims or lawsuits arising out of any injury, illness, or damage.

Code added to the biohackathon projects repository will be open source under the MIT licence. It is always possible for participants to create their own repository with a licence of their preference as far as they link to it from the BioHackathon repository. Please notice that a licence MUST be used, i.e., repositories with no licence at all MUST be avoided. Any chosen licence for projects developed as part of the BioHackathon SHOULD be open source.