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elixir-europe
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MARS
Multi-Repository Data Submission using ISA-JSON
MIT License
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Multi auth provider credentials
#93
kdp-cloud
opened
4 days ago
0
Perform an actual multi-omic submission
#92
kdp-cloud
opened
5 days ago
0
Update BioSamples entry with external references
#91
bedroesb
opened
6 days ago
0
BioSamples submission is not submitting any metadata
#90
bedroesb
opened
1 week ago
0
Add paper
#89
kdp-cloud
closed
1 week ago
0
Add files via upload
#88
floradanna
closed
1 week ago
0
Map data files to repository
#87
kdp-cloud
closed
1 week ago
5
Create a MARS logo
#86
bedroesb
opened
2 weeks ago
2
Update main Readme and diagram
#85
bedroesb
opened
2 weeks ago
0
Clean up test-data and make sure all provided ISA-JSONs work
#84
bedroesb
opened
2 weeks ago
0
Alias in ISA-JSON is not the same as the one submitted to ENA
#83
bedroesb
opened
2 weeks ago
0
Make password file support multiple password pairs
#82
bedroesb
opened
2 weeks ago
0
Do we want to let Samples inherit Source material info to comply with the ENA minimal checklist? (collection date and geografical location)
#81
bedroesb
opened
2 weeks ago
0
ISA Investigation is being submitted as a ENA Study/Project
#80
bedroesb
opened
2 weeks ago
0
ENA Study accession is being dumped in the ISA Study - maybe better in the assay?
#79
bedroesb
opened
2 weeks ago
0
Current data files parameter is not repository specific
#78
bedroesb
closed
1 week ago
0
Metabolights fix failing tests
#77
kdp-cloud
closed
2 weeks ago
1
Metabolights initial integration updates for MARS cli
#76
oyurekten
closed
2 weeks ago
0
Fixes from testing
#75
apriltuesday
closed
2 weeks ago
0
Debugging session biosamples ena
#74
kdp-cloud
closed
2 weeks ago
1
assays > processSequence > parameterValues are not being parsed by the ENA endpoint
#73
bedroesb
opened
2 weeks ago
0
Update MARS documentation
#72
lbouri
closed
2 weeks ago
1
adding jsonata_validate prototype
#71
xiaoranzhou
opened
2 weeks ago
0
Mars receipt library
#70
kdp-cloud
closed
2 weeks ago
0
Fixes to:
#69
dipayan1985
closed
2 weeks ago
0
refreshed multiomic ISA-JSON with RNA-Seq, CNV-Seq and metabolite profiling using LC-MS
#68
proccaserra
closed
2 weeks ago
1
Repository API receipt error catching
#67
bedroesb
opened
2 weeks ago
0
fix setup again
#66
apriltuesday
closed
2 weeks ago
1
fix: process file upload before submitting isa-json to ena
#65
lbouri
closed
2 weeks ago
1
Process isa json after biosamples
#64
kdp-cloud
closed
2 weeks ago
0
Change type from Extract name to library name
#63
kdp-cloud
closed
2 weeks ago
0
Update repository API for async receipt
#62
apriltuesday
closed
2 weeks ago
1
Create ARC-ISA-example
#61
xiaoranzhou
closed
2 weeks ago
1
Add FTP upload
#60
apriltuesday
closed
2 weeks ago
1
Add raw ENA test file + update ISA JSON accordingly + update to target_repository
#59
bedroesb
closed
2 weeks ago
2
Mars receipt library
#58
Pedram-A-Keyvani
closed
2 weeks ago
0
Update README.md
#57
xiaoranzhou
closed
2 weeks ago
0
Fix setup.py
#56
apriltuesday
closed
3 weeks ago
0
Settle on accepted protocols / repository
#55
bedroesb
opened
3 weeks ago
1
Pre hackathon
#54
kdp-cloud
closed
3 weeks ago
0
Prepare RAW sequences as test data + Adapt the ISA-JSON
#53
bedroesb
closed
6 days ago
0
Mars receipt library
#52
Pedram-A-Keyvani
closed
2 weeks ago
4
Implementation of JSONata for secondary validation
#51
kdp-cloud
opened
1 month ago
1
All objects that have comments field inherit from CommentedIsaBase.
#50
oyurekten
closed
1 month ago
0
new and updated values for DataTypeEnum
#49
oyurekten
closed
1 month ago
0
Make sure the ENA ISA JSON repository API accepts our test ISA JSON
#48
bedroesb
opened
2 months ago
0
Update ENA ISA jSO\\
#47
bedroesb
closed
2 months ago
1
BioSamples ISA JSON repository API needs to return a path like structure for its accessions
#46
bedroesb
closed
6 days ago
1
Take away BioHackathon mentions in code of BioSamples and ENA
#45
bedroesb
opened
3 months ago
0
BioSamples response as per receipt format
#44
dipayan1985
closed
2 months ago
6
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