emmanuelparadis ape issues

emmanuelparadis / ape

Analysis of Phylogenetics and Evolution

https://emmanuelparadis.github.io/

GNU General Public License v2.0

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issues

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ape::drop.tip() unrooting tree

#32 HedvigS closed 3 years ago
14
Support lists of trees in `write.tree()`

#31 ms609 closed 3 years ago
1
Spelling: umatched → unmatched

#30 ms609 closed 3 years ago
1
fix issue of read.nexus to solve the labels of translation contains space

#29 xiangpin closed 3 years ago
1
where() function with aa sequences

#28 brunomioto closed 3 years ago
1
Automate testing

#27 ms609 closed 3 years ago
1
function nj() is modifying distance matrix

#26 nreid closed 3 years ago
2
Improve prop.part and consensus

#25 KlausVigo closed 3 years ago
1
Error when using ape::pcoa

#24 marianagarciacriado closed 3 years ago
3
Weird behaviour of parameter `random` in multi2di()

#23 fcampelo closed 3 years ago
6
Glitch in dist.dna

#22 Anthogonyst closed 3 years ago
1
Commit improve fan for trees without edge length

#21 KlausVigo closed 3 years ago
2
fix phylogram.plot to allow numeric input vectors for lty

#20 KlausVigo closed 3 years ago
0
recent changes to plot.phylo / phylogram.plot have side effext

#19 KlausVigo closed 3 years ago
1
A problem regarding calculating phylogenetic signal (λ) via R

#18 PyrrhaNiko closed 3 years ago
1
Rounding error deep in 'pcoa'

#17 cjcarlson closed 3 years ago
4
Allow styling of nodes within `phylogram.plot()`

#16 ms609 closed 3 years ago
0
Use graphical parameters to set plot defaults

#15 ms609 closed 3 years ago
1
(Some) large trees fail in ape 5.5

#14 erikrikarddaniel closed 3 years ago
5
Error in chronos function

#13 takaW496 closed 3 years ago
6
bug in nj() -- ape 5.5

#12 emmanuelparadis closed 3 years ago
3
faster multi2di for large trees (avoid which)

#11 KlausVigo closed 3 years ago
1
fixed bug of as.phylo for multiple class object

#10 GuangchuangYu closed 3 years ago
2
Bug in ape 5.5

#9 DeaconOfBiology closed 3 years ago
5
fix some edge cases for ONEwise

#8 KlausVigo closed 3 years ago
1
add SHORTwise and replace ONEwise with SHORTwise in postprocess.prop.…

#7 KlausVigo closed 3 years ago
2
read.nexus.data does not handle continuous characters

#6 brpetrucci closed 3 years ago
2
Enable `type = "s"` in `ltt.plot.coords()`

#5 TheoPannetier closed 3 years ago
1
add node labels to tree. "Nicer" plot in man page

#4 KlausVigo closed 3 years ago
1
ltt.plot() and ltt.plot.coords() misinterpret extinction events?

#3 TheoPannetier closed 3 years ago
7
fixed parsing tree with single quoted labels

#2 GuangchuangYu closed 3 years ago
0
labels with single quotes in some Newick trees are badly read

#1 emmanuelparadis closed 3 years ago
1