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emmanuelparadis
/
ape
analysis of phylogenetics and evolution
http://ape-package.ird.fr/
GNU General Public License v2.0
52
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`1:length(x)` → `seq_along(x)`
#77
ms609
closed
1 year ago
0
Specify class in .uncompressTipLabel
#76
ms609
closed
1 year ago
8
fix errors in phangorn
#75
KlausVigo
closed
1 year ago
1
Add GitHub links to DESCRIPTION
#74
maelle
closed
1 year ago
4
rtt function no longer handles NAs in dates
#73
brj1
closed
1 year ago
5
Parallelization in dist.topo
#72
V-Z
closed
8 months ago
1
Parallelization for dist.topo()
#71
V-Z
closed
1 year ago
0
segfault when reading in tree
#70
lpipes
closed
1 year ago
2
DESCRIPTION should list dependency R > 4.1
#69
tavareshugo
closed
1 year ago
2
fix: Add dependency on R 4.1.0 because of native pipe usage
#68
maelle
closed
1 year ago
14
Unable to install
#67
sealavi
closed
1 year ago
3
make drop.tip and keep.tip generic
#66
KlausVigo
closed
1 year ago
1
consensus did not use postprocess.prop.part and might scramble nodela…
#65
KlausVigo
closed
1 year ago
1
ape::cophenetic.phylo() - Tree too big - any workarounds?
#64
alptaciroglu
closed
1 year ago
2
possible bug in ace
#63
RubyRedlich
opened
2 years ago
6
Error: cannot use same sampling date for all the tips
#62
aguilar-gomez
closed
2 years ago
1
speed up rtt function, allow multifurcations
#61
KlausVigo
closed
2 years ago
1
Bug fix in .write.tree2
#60
KlausVigo
closed
2 years ago
1
fix the edge.length or height when converting between the hclust and …
#59
xiangpin
closed
2 years ago
2
can't read in tree
#58
lpipes
closed
1 year ago
3
Bug fix for error introduced via #52
#57
KlausVigo
closed
2 years ago
1
Potential bug when reading Mesquite formatting from nexus files
#56
carolynvlasveld
closed
2 years ago
1
remove recursions
#55
KlausVigo
closed
2 years ago
2
Ladderize results C stack usage overflow
#54
teng-gao
closed
2 years ago
6
write.tree error
#53
lpipes
closed
1 year ago
25
Allow different "order" in unroot
#52
KlausVigo
closed
2 years ago
3
multi2di and di2multi might not work for compressed multiPhylo objects
#51
KlausVigo
closed
2 years ago
0
wrong behaviour of is.monophyletic() with duplicated labels
#50
emmanuelparadis
closed
2 years ago
0
read.tree() struggling with certain tip and node labels
#49
HedvigS
closed
2 years ago
17
version of keep.tip which considers internal nodes as well?
#48
HedvigS
closed
2 years ago
18
Simplify workflows
#47
ms609
closed
1 year ago
1
Don't build vignettes in R3.6.3
#46
ms609
closed
2 years ago
0
Fix `[<-.multiPhylo`
#45
ms609
closed
2 years ago
11
phangorn now requires R4.1
#44
ms609
closed
2 years ago
1
boot.phylo(): 'Error in 'bitsplits(phy)': INTEGER() can only be applied to a 'integer', not a 'double'
#43
pawelqs
closed
2 years ago
5
Improve comparePhylo
#42
KlausVigo
closed
2 years ago
2
improve comparePhylo
#41
KlausVigo
closed
2 years ago
1
corBrownian error
#40
robertlennox
closed
2 years ago
3
can't write tree
#39
lpipes
closed
2 years ago
9
Support n < 2 in `unique.multiPhylo()`
#38
ms609
closed
2 years ago
1
`c.multiPhylo` drops names
#37
ms609
closed
2 years ago
2
`[<-.multiPhylo` does not support empty `[]`
#36
ms609
closed
2 years ago
1
[<-.multiPhylo does not support empty []
#35
ms609
closed
2 years ago
1
improve as.evonet.phylo
#34
KlausVigo
closed
2 years ago
1
fix the order of tip in as.hclust.phylo
#33
xiangpin
closed
2 years ago
1
ape::drop.tip() unrooting tree
#32
HedvigS
closed
2 years ago
14
Support lists of trees in `write.tree()`
#31
ms609
closed
2 years ago
1
Spelling: umatched → unmatched
#30
ms609
closed
2 years ago
1
fix issue of read.nexus to solve the labels of translation contains space
#29
xiangpin
closed
2 years ago
1
where() function with aa sequences
#28
brunomioto
closed
2 years ago
1
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