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enanomapper / ontologies

The eNanoMapper ontology
https://jbiomedsem.biomedcentral.com/articles/10.1186/s13326-015-0005-5
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Duplicate classes #104

Open JKChang2015 opened 7 years ago

JKChang2015 commented 7 years ago

There are 53 duplicated classes (same label with different IRIs) in eNM ontology:

  1. grade 2 hematoma ae http://purl.obolibrary.org/obo/OAE_0003031 http://purl.obolibrary.org/obo/OAE_0003581
  2. solubility http://purl.enanomapper.org/onto/ENM_0000089 http://purl.obolibrary.org/obo/PATO_0001536
  3. resazurin http://purl.obolibrary.org/obo/CHEBI_8806 http://purl.enanomapper.org/onto/ENM_8000288
  4. reporter gene assay http://www.bioassayontology.org/bao#BAO_0003006 http://purl.obolibrary.org/obo/OBI_0002082
  5. grade 3 postoperative thoracic procedure complication ae http://purl.obolibrary.org/obo/OAE_0004145 http://purl.obolibrary.org/obo/OAE_0004146
  6. composition http://semanticscience.org/resource/CHEMINF_000230 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C53414
  7. grade 3 intestinal stoma leak ae http://purl.obolibrary.org/obo/OAE_0004083 http://purl.obolibrary.org/obo/OAE_0004084
  8. cytokine secretion http://purl.enanomapper.org/onto/ENM_8000245 http://purl.obolibrary.org/obo/GO_0050663
  9. immunotoxicity http://purl.enanomapper.org/onto/ENM_0000046 http://purl.bioontology.org/ontology/npo#NPO_1339
  10. vesicular rash ae http://purl.obolibrary.org/obo/OAE_0002540 http://purl.obolibrary.org/obo/OAE_0002045
  11. x-ray photoelectron spectroscopy http://purl.org/obo/owl/FIX#FIX_0000041 http://purl.obolibrary.org/obo/CHMO_0000404
  12. read accross http://purl.enanomapper.org/onto/ENM_8000122 http://purl.enanomapper.org/onto/ENM_8000074
  13. coagulopathy ae http://purl.obolibrary.org/obo/OAE_0002403 http://purl.obolibrary.org/obo/OAE_0000934
  14. osteonecrosis of jaw ae http://purl.obolibrary.org/obo/OAE_0002685 http://purl.obolibrary.org/obo/OAE_0001260
  15. microscope http://www.bioassayontology.org/bao#BAO_0150008 http://purl.bioontology.org/ontology/npo#NPO_1437
  16. perimeter http://purl.obolibrary.org/obo/PATO_0001711 http://purl.enanomapper.org/onto/ENM_8000050
  17. glucose tolerance test http://purl.obolibrary.org/obo/OBI_0000721 http://www.ebi.ac.uk/efo/EFO_0004307
  18. area http://purl.obolibrary.org/obo/PATO_0001323 http://purl.enanomapper.org/onto/ENM_8000059
  19. optical microscope http://www.bioassayontology.org/bao#BAO_0150009 http://purl.bioontology.org/ontology/npo#NPO_1439
  20. intestinal stoma leak ae http://purl.obolibrary.org/obo/OAE_0003268 http://purl.obolibrary.org/obo/OAE_0003267
  21. aspect ratio http://purl.bioontology.org/ontology/npo#NPO_1365 http://purl.enanomapper.org/onto/ENM_8000064
  22. report http://purl.obolibrary.org/obo/IAO_0000088 http://purl.enanomapper.org/onto/ENM_8000078
  23. isoelectric point http://purl.enanomapper.org/onto/ENM_0000086 http://purl.bioontology.org/ontology/npo#NPO_1204 http://purl.enanomapper.org/onto/ENM_8000268
  24. tmax http://purl.bioontology.org/ontology/npo#NPO_1528 http://www.bioassayontology.org/bao#BAO_0003037
  25. dustiness http://purl.enanomapper.org/onto/ENM_0000085 http://purl.enanomapper.org/onto/ENM_9000003
  26. binding assay http://www.bioassayontology.org/bao#BAO_0002989 http://purl.obolibrary.org/obo/OBI_0001146
  27. vssa http://purl.enanomapper.org/onto/ENM_0000091 http://purl.enanomapper.org/onto/ENM_8000306
  28. coronary artery embolism ae http://purl.obolibrary.org/obo/OAE_0001787 http://purl.obolibrary.org/obo/OAE_0000844
  29. partial least squares http://purl.enanomapper.org/onto/ENM_8000091 http://purl.enanomapper.org/onto/ENM_8000093
  30. parotitis ae http://purl.obolibrary.org/obo/OAE_0001964 http://purl.obolibrary.org/obo/OAE_0002529
  31. surface area http://purl.bioontology.org/ontology/npo#NPO_1235 http://semanticscience.org/resource/CHEMINF_000247
  32. cmax http://www.bioassayontology.org/bao#BAO_0002119 http://purl.bioontology.org/ontology/npo#NPO_1527
  33. disseminated bcg infection ae http://purl.obolibrary.org/obo/OAE_0004278 http://purl.obolibrary.org/obo/OAE_0001543
  34. pbpk http://purl.enanomapper.org/onto/ENM_0000078 http://purl.enanomapper.org/onto/ENM_8000284
  35. volume http://purl.obolibrary.org/obo/PATO_0000918 http://purl.enanomapper.org/onto/ENM_8000061
  36. size distribution http://purl.bioontology.org/ontology/npo#NPO_1697 http://purl.enanomapper.org/onto/ENM_8000292
  37. hyporeflexia ae http://purl.obolibrary.org/obo/OAE_0003236 http://purl.obolibrary.org/obo/OAE_0000671
  38. enterocolitis infectious ae http://purl.obolibrary.org/obo/OAE_0003319 http://purl.obolibrary.org/obo/OAE_0000918
  39. assay http://purl.obolibrary.org/obo/OBI_0000070 http://purl.obolibrary.org/obo/OBI_0000070
  40. glossitis ae http://purl.obolibrary.org/obo/OAE_0002098 http://purl.obolibrary.org/obo/OAE_0001965
  41. pka http://www.bioassayontology.org/bao#BAO_0002131 http://semanticscience.org/resource/CHEMINF_000195
  42. grade 3 pancreatitis ae http://purl.obolibrary.org/obo/OAE_0003499 http://purl.obolibrary.org/obo/OAE_0003498
  43. median http://purl.bioontology.org/ontology/npo#NPO_1801 http://purl.enanomapper.org/onto/ENM_8000045
  44. percent cell viability http://purl.bioontology.org/ontology/npo#NPO_1816 http://www.bioassayontology.org/bao#BAO_0000202
  45. lower gastrointestinal hemorrhage ae http://purl.obolibrary.org/obo/OAE_0001141 http://purl.obolibrary.org/obo/OAE_0003356
  46. idiopathic thrombocytopenic purpura ae http://purl.obolibrary.org/obo/OAE_0002373 http://purl.obolibrary.org/obo/OAE_0002073
  47. zeta potential http://purl.enanomapper.org/onto/ENM_8000111 http://purl.enanomapper.org/onto/ENM_0000092 http://purl.bioontology.org/ontology/npo#NPO_1302
  48. eye inflammation ae http://purl.obolibrary.org/obo/OAE_0001778 http://purl.obolibrary.org/obo/OAE_0000560
  49. menorrhagia ae http://purl.obolibrary.org/obo/OAE_0001170 http://purl.obolibrary.org/obo/OAE_0004281
  50. age http://www.ebi.ac.uk/efo/EFO_0000246 http://purl.obolibrary.org/obo/PATO_0000011
  51. autism ae http://purl.obolibrary.org/obo/OAE_0001544 http://purl.obolibrary.org/obo/OAE_0000444
  52. computed tomography http://purl.bioontology.org/ontology/npo#NPO_1480 http://www.ebi.ac.uk/efo/EFO_0003960
  53. partition coefficient http://semanticscience.org/resource/CHEMINF_000496 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C20610
JKChang2015 commented 7 years ago

I've removed some of the un-defined classes from Ian-ext.owl

egonw commented 7 years ago

@JKChang2015, the CHEMINF terms are descriptors, so I consider those false duplicates... the labels could use clarification, possibly, but they are different from an end point... so, pKa having twice sound fine to me.