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enanomapper / ontologies

The eNanoMapper ontology
https://jbiomedsem.biomedcentral.com/articles/10.1186/s13326-015-0005-5
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carbon black nanoparticle? #81

Closed egonw closed 7 years ago

egonw commented 8 years ago

There does not seem to be a term for carbon black nanoparticles yet. Like in http://particleandfibretoxicology.biomedcentral.com/articles/10.1186/1743-8977-11-4

ChEBI has "carbon black" but I am not sure at this moment if that is in the right place in the ontology (given NPO has "metal oxide" and "metal oxide nanoparticle") and this term may not be (ontologically) the same as "carbon black nanoparticle"... (and no time to check immediately right now).

vedina commented 8 years ago

AFAIK carbon black is not necessary nanoparticle

egonw commented 8 years ago

In that paper it is sized 14 nm, according to a Visby data set submission by Penny ;)

I'm now annotating it as "nanoparticle" because also a general "carbon nanoparticle" type does not exist in the ontology.

vedina commented 8 years ago

http://carbon-black.org/files/ICBA-Particle-CB-Factsheet-111413.pdf

JKChang2015 commented 8 years ago

carbon black is not necessary a nanoparticle, his suggestion is to add a carbon black nanoparticle to a sub-class of carbon black.

egonw commented 8 years ago

Or go all the way how NPO models it... which has "titanium dioxide" and "titanium dioxide nanoparticle" and uses an OWL axiom to link the second to the first...

G-Owen commented 8 years ago

ChEBI now has carbon black nanoparticle (CHEBI:133602) which is classified as a) is_a carbon black (CHEBI:82297) b) is_a carbon nanostructure (CHEBI:50812) c) is_a nanoparticle (CHEBI:50803)

JKChang2015 commented 7 years ago

has been added. 7f67a5839f3da40bddc9d8cdf6f5cb09e90cfb41