Covid Workflow Manager
The Covid Workflow Manager contains pipelines and services that run processing
pipelines for the SARS-CoV-2 Data Hubs, as
part of the European COVID-19 Data Platform.
| Pipeline |
Location |
Description |
| Jovian |
/jovian |
A user-friendly Viromics toolkit |
| Artic |
/artic |
nCoV-2019 novel coronavirus bioinformatics protocol |
| ENA Nanopore |
/ont |
A customised pipeline for analysing Nanopore SARS-CoV-2 data |
| ENA SARS-CoV2 Variant Calling |
/vcf |
A pipeline for mapping, calling, and annotation of SARS-CoV2 variants |
| Service |
Location |
Description |
| Pangolin |
/pangolin |
Lineage annotation service |
| Reports |
/reports |
Interactive reporting and analysis services |
| Logs |
/logs |
Logging dashboard that displays the status of pipeline runs |