enasequence webin-cli issues

enasequence / webin-cli

Webin command line submission program.

Apache License 2.0

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issues

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AGP file support removal

#131 dipayan1985 closed 1 week ago
0
Vulnerabilities issue

#130 debbyku closed 2 weeks ago
1
Validation issue

#129 bio-informatician opened 3 weeks ago
0
Read type configuration in run is invalid. The submission has failed because of a system error.

#128 nickhir opened 1 month ago
0
webin-cli version 8.0.0 incorrectly returns with `Invalid submission account user name or password`

#127 anna-parker opened 1 month ago
0
Possibly inconsistent validation error due to read order

#126 boasvdp opened 3 months ago
2
system error with webin-cli-7.3.0.jar Connection to taxonomy URL

#125 chhenyy opened 3 months ago
3
ENA validate and test work, but submission ends prematurely

#124 iwilkie opened 3 months ago
1
Needless INFO log "Please upgrade to Webin-CLI version 7.0.1 " despite being on version 7.2.1

#123 corneliusroemer opened 4 months ago
0
Authentication error with aspera

#122 YibiChen opened 4 months ago
2
Ena 6099

#121 haseeb-gh closed 5 months ago
0
Assemblies still private while study is public

#120 Marije179 opened 6 months ago
2
https 403 error from REST V2 API

#119 ZuzanaSebb opened 6 months ago
0
ENA-6091

#118 haseeb-gh closed 6 months ago
0
Genome submission: "ERROR: Invalid submission account user name or password."

#117 thallinger closed 7 months ago
1
ERROR: Organism name "Wickerhamomyces sp." is not submittable.

#116 SumeetTiwari07 opened 7 months ago
2
Could not retrieve BioSample

#115 ttubb closed 7 months ago
2
Invalid submission account user name or password

#114 eritema closed 7 months ago
1
Unable to upload/validate samples in project/sample set to private

#113 GregDeakin closed 7 months ago
6
A server error occurred when attempting to submit

#112 olekto opened 8 months ago
1
Manifest sample submission 2

#111 Rajkumar-D closed 8 months ago
0
Submitting sample json passed in json manifest file

#110 Rajkumar-D closed 8 months ago
0
Retrying sending submission to server error

#109 timyerg closed 1 year ago
2
ERROR: Organism name "Bacteriophage sp." is not submittable.

#108 sofiadahlman closed 1 year ago
1
conflicting translation tables

#107 RvV1979 opened 1 year ago
0
A server error occurred when retrieving rate limit information

#106 scottishwormboy opened 1 year ago
3
ENA-5448

#105 haseeb-gh closed 1 year ago
0
Pacbio bam file upload hangs

#104 A-J-F-Mackintosh opened 1 year ago
0
'missing: third party data' is not accepted as value for 'country' or 'collection_date'

#103 bmschoene closed 1 year ago
7
test

#102 bmschoene closed 1 year ago
1
Locus tag question

#101 ValWood opened 1 year ago
5
Unable to represent known frameshifts in CDS

#100 ValWood opened 1 year ago
4
Unable to submit duplicate UTRs with the same coordinates

#99 ValWood opened 1 year ago
0
Cryptic error message for duplicated synonyms

#98 ValWood opened 1 year ago
0
ENA-5566

#97 haseeb-gh closed 1 year ago
0
ERROR: An exception occurred: Failed to retrieve file or directory information for: webin-cli/reads/sample/sample.fastq.gz. The submission has failed because of a system error.

#96 timyerg closed 1 year ago
9
ERROR: Failed to upload files to webin.ebi.ac.uk using FTP. connect timed out Failed to upload files to webin.ebi.ac.uk because of a system error.

#95 genomics-ngsCBMSO opened 1 year ago
6
Ena 5288 password file

#94 SkyVelothi closed 11 months ago
0
Add Library construction protocol in XML output

#93 wna-se opened 1 year ago
0
Added -validateFiles option for reads to avoid having to give manifest meta fields.

#92 raskoleinonen closed 1 year ago
0
Library construction protocol manifest field is ignored in XML output

#91 wna-se closed 1 year ago
1
how can we modify the Assembly by using Webin-cli?

#90 debbyku opened 1 year ago
1
fail to use "-ascp" in submission

#89 debbyku opened 1 year ago
0
ENA-5394

#88 haseeb-gh closed 1 year ago
0
ENA-5362

#87 haseeb-gh closed 1 year ago
0
Recurrent upload issue

#86 bavja-DTU closed 1 year ago
2
ERROR: A server error occurred when attempting to submit. The submission has failed because of a system error.

#85 nick297 closed 1 year ago
4
Conda version lagging behing github version

#84 nick297 opened 1 year ago
1
Error "Invalid file content" during file processing

#83 erosix opened 1 year ago
11
ERROR: Invalid submission account user name or password

#82 ireneortega closed 1 year ago
2