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fonda
Fonda is a framework which offers scalable and automatic analysis of multiple NGS sequencing data types
Apache License 2.0
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Added single end read handling to xenome
#134
syansanofi
closed
4 years ago
4
CI process description
#133
kamyshova
closed
4 years ago
0
Updates from 6/05/20
#132
kamyshova
closed
4 years ago
4
Rename DnaWgsVar_BamWorkflow doc
#131
kamyshova
closed
4 years ago
0
DnaWgsVar_Fastq workflow description
#130
kamyshova
closed
4 years ago
0
DnaCaptureVar_Bam workflow description
#129
kamyshova
closed
4 years ago
0
DnaCaptureVar_Fastq workflow description
#128
kamyshova
closed
4 years ago
0
DnaAmpliconVar_Bam workflow description
#127
kamyshova
closed
4 years ago
0
DnaAmpliconVar_Fastq workflow description
#126
kamyshova
closed
4 years ago
0
Update DnaAnalysis
#125
kamyshova
closed
4 years ago
0
Gradle refactoring
#124
kamyshova
closed
4 years ago
0
Issue 89: Test and document DnaWgsVar_Bam
#123
yurysukhorukov
closed
4 years ago
0
Test and document the DnaWgsVar_Fastq workflow
#122
kamyshova
closed
4 years ago
0
Test and document the DnaCaptureVar_Fastq workflow
#121
kamyshova
closed
4 years ago
0
Test and document the DnaCaptureVar_Bam workflow
#120
kamyshova
closed
4 years ago
0
Test and document the DnaAmpliconVar_Fastq workflow
#119
kamyshova
closed
4 years ago
0
Test and document the DnaAmpliconVar_Bam workflow
#118
kamyshova
closed
4 years ago
0
RnaCaptureVar_Fastq workflow description
#117
kamyshova
closed
4 years ago
0
scRnaExpression_Bam workflow description
#116
kamyshova
closed
4 years ago
0
Test and document the scRnaExpression_Bam workflow
#115
kamyshova
closed
4 years ago
0
TcrRepertoire_Fastq workflow description
#114
kamyshova
closed
4 years ago
0
Issue 111: Test and document scRnaExpression Fastq workflow
#113
yurysukhorukov
closed
4 years ago
0
HlaTyping_Fastq workflow description
#112
kamyshova
closed
4 years ago
0
Test and document the scRnaExpression_Fastq workflow
#111
kamyshova
closed
4 years ago
0
RnaFusion_Fastq workflow document
#110
kamyshova
closed
4 years ago
0
Minor clean up
#109
kamyshova
closed
4 years ago
0
rRNABED flag for RNASeqc tool can be empty
#108
kamyshova
closed
4 years ago
0
Workflow post processes were updated
#107
kamyshova
closed
4 years ago
0
Exec path refactoring
#106
kamyshova
closed
4 years ago
0
Minor style refactoring
#105
kamyshova
closed
4 years ago
0
Replace r characters if needed
#104
kamyshova
closed
4 years ago
0
Hotfix: RnaExpressionBam global config minor fix
#103
yurysukhorukov
closed
4 years ago
0
Minor EOL refactoring
#102
kamyshova
closed
4 years ago
0
Fix integration tests in according to defeult "LF" eol
#101
kamyshova
closed
4 years ago
0
Change the default EOL
#100
kamyshova
closed
4 years ago
0
Issue #88: add documentation for RnaExpression_Bam workflow
#99
yurysukhorukov
closed
4 years ago
0
EOL and rRNABED enhancement
#98
kamyshova
closed
4 years ago
0
Minor refactoring
#97
kamyshova
closed
4 years ago
0
issue #90: add documentation
#96
DTegai
closed
4 years ago
0
Added basic rules regarding the branches management
#95
sidoruka
closed
4 years ago
0
Issue #15: implement ScRnaExpressionFastq workflow
#94
DTegai
closed
4 years ago
0
Test and document the HlaTyping_Fastq workflow
#93
kamyshova
closed
4 years ago
0
Test and document the TcrRepertoire_Fastq workflow
#92
kamyshova
closed
4 years ago
0
Test and document the RnaCaptureVar_Fastq workflow
#91
kamyshova
closed
4 years ago
2
Test and document the Bam2Fastq workflow
#90
kamyshova
closed
4 years ago
2
Test and document the DnaWgsVar_Bam workflow
#89
kamyshova
closed
4 years ago
1
Test and document the RnaExpression_Bam workflow
#88
kamyshova
closed
4 years ago
0
Test and document the RnaFusion_Fastq workflow
#87
kamyshova
closed
4 years ago
0
Extend picard qc condition
#86
kamyshova
closed
4 years ago
0
issue #19 : were added RnaCaptureVarFastqWorkflow and tests for it
#85
ilya-ugr
closed
4 years ago
0
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