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fonda
Fonda is a framework which offers scalable and automatic analysis of multiple NGS sequencing data types
Apache License 2.0
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issue#183: scRnaExpressionCellRangerFastq workflow: remove feature reference if only gene expression
#184
kamyshova
closed
3 years ago
0
scRnaExpressionCellRanger_fastq remove feature reference if only gene expression
#183
syansanofi
closed
3 years ago
0
Middleware: update header of the sample manifest
#182
kamyshova
closed
3 years ago
0
Fix QC_summary_analysis.R script
#181
kamyshova
closed
3 years ago
0
issue #162: new Fonda scripting/launching approach
#180
kamyshova
closed
3 years ago
0
CONTRIBUTING.md was updated according to AppVeyor CI
#179
kamyshova
closed
3 years ago
0
Fonda version was added to help
#178
kamyshova
closed
3 years ago
0
Added appveyor support
#177
sidoruka
closed
3 years ago
0
issue #175: Fix QC_summary_analysis.R script
#176
kamyshova
closed
3 years ago
0
scRnaExpression Fastq does not invoke QC (hangs cohort analysis)
#175
syansanofi
closed
3 years ago
3
issue #173: Add a check the LibraryType in QC analysis
#174
kamyshova
closed
3 years ago
0
Cohort analysis hangs
#173
syansanofi
closed
3 years ago
2
Middleware: libtype and master columns for the sample manifest
#172
kamyshova
closed
3 years ago
0
Middleware: sc_rna_expression_cellranger_fastq.py script
#171
kamyshova
closed
3 years ago
0
issue #169: Feature Library duplicate samples
#170
kamyshova
closed
3 years ago
0
Feature Library duplicate samples
#169
syansanofi
closed
3 years ago
5
Update docs for GENOME_LOAD parameter
#168
kamyshova
closed
4 years ago
0
Add variable genomeLoad option to STAR tool
#167
kamyshova
closed
4 years ago
0
Middleware: DnaCaptureVar_Fastq script was updated
#166
kamyshova
closed
4 years ago
0
The new design of the SCRnaExpressionCellRangerFastq workflow
#165
kamyshova
closed
4 years ago
0
SCRnaExpression-CellRangerFastq - new style
#164
syansanofi
closed
4 years ago
8
Middleware: update LibraryType in dna_capture_var_fastq.py
#163
kamyshova
closed
4 years ago
0
A new Fonda scripting/launching approach
#162
kamyshova
opened
4 years ago
2
RNA SeQC tool: add bwa argument
#161
kamyshova
closed
4 years ago
0
Middleware: tool configs updates
#160
kamyshova
closed
4 years ago
1
scRnaExpressionCellRanger workflow: doubletdetection invocation fix
#159
kamyshova
closed
4 years ago
1
scRnaExpressionCellRanger workflow - doubletdetection not invoked
#158
syansanofi
closed
4 years ago
0
Middleware: sample manifest header template updates
#157
kamyshova
closed
4 years ago
0
Middleware: minor updates
#156
kamyshova
closed
4 years ago
1
Middleware: updates to extraction of various sample names
#155
kamyshova
closed
4 years ago
1
Minor updates from 4/06/20
#154
kamyshova
closed
4 years ago
1
Middleware: the sync option
#153
kamyshova
closed
4 years ago
1
Middleware: the sync option
#152
kamyshova
closed
4 years ago
1
Fonda_middleware: the sync option
#151
kamyshova
closed
4 years ago
1
The middleware scripts improvements
#150
kamyshova
closed
4 years ago
1
Xenome: remove merging of ambiguous and both fastqs
#149
kamyshova
closed
4 years ago
1
Xenome: remove merging of ambiguous and both fastqs
#148
syansanofi
closed
4 years ago
0
Add issue/PR management information
#147
kamyshova
opened
4 years ago
1
Middleware: rna_expression_fastq.py script
#146
kamyshova
closed
4 years ago
2
Snpsift tool references in the documentation
#145
kamyshova
opened
4 years ago
0
Paired mode analysis: control bam was deleted before it has been used
#144
kamyshova
closed
3 years ago
1
Exomecnv tool: exome_cnv.R script is not exist
#143
kamyshova
opened
4 years ago
0
Sequenza tool: sequenza.R script is not exist
#142
kamyshova
opened
4 years ago
0
SnpEff annotation step: `vcf_snpeff_annotation.py` script fails with EOFError
#141
kamyshova
opened
4 years ago
0
Bam2Fastq workflow sort and index bam steps fail
#140
kamyshova
opened
4 years ago
0
Incorrect Fonda behavior in asynchronous mode
#139
kamyshova
opened
4 years ago
0
MergeMutation status check doesn't respect mode analysis
#138
kamyshova
opened
4 years ago
1
Incorrect output expected file from FusionCatcher tool
#137
kamyshova
opened
4 years ago
0
Add overall information on the issue/pr management approach
#136
sidoruka
opened
4 years ago
0
xenome single ended addition
#135
syansanofi
closed
4 years ago
1
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