epigen scifiRNA-seq issues - Githubissues

epigen / scifiRNA-seq

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ATAC V2

#13 cstrlln opened 1 year ago
0
Expected 123 Cycles, but only 92 bases found in SAM records

#12 pocession closed 1 year ago
1
KeyError: 'species_mixing'

#11 Jssmith91 opened 2 years ago
0
UMI count matrix

#10 somnathtagore opened 3 years ago
1
input-bam-glob issue

#9 somnathtagore opened 3 years ago
1
summarizer.py uses default values for --barcode-orientation and --r2-barcodes

#8 oliclement opened 3 years ago
0
Input BAM description

#7 Hofphi closed 3 years ago
3
Reg: .scifi.log.txt file

#6 somnathtagore opened 3 years ago
0
Issue with job submission

#5 somnathtagore closed 3 years ago
1
FileNotFoundError: [Errno 2] No such file or directory: 'sbatch'

#4 oliclement opened 3 years ago
38
in submit_job cmd = """{cmd} -J {job_name} \\ KeyError: 'job_name'

#3 oliclement closed 3 years ago
1
Fix getting gtf_file argument from config

#2 afrendeiro closed 3 years ago
0
"gtf_file" not in args Namespace

#1 afrendeiro closed 3 years ago
0