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epiverse-trace
/
epidemics
A library of published compartmental epidemic models, and classes to represent demographic structure, non-pharmaceutical interventions, and vaccination regimes, to compose epidemic scenarios.
https://epiverse-trace.github.io/epidemics/
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Fix URL for pkgdown website
#192
pratikunterwegs
closed
3 months ago
0
Improve input checking and cross-checking
#191
pratikunterwegs
closed
1 month ago
2
Enhance `epidemic_size()`
#190
pratikunterwegs
closed
2 months ago
0
Access intervention names
#189
pratikunterwegs
opened
4 months ago
0
Describe epidemics design decisions
#188
pratikunterwegs
closed
4 months ago
0
Check effect of multiple interventions
#187
pratikunterwegs
closed
4 months ago
4
Rename transmissibility to transmission rate
#186
pratikunterwegs
closed
3 months ago
0
Add NEWS.md and update version to 0.1.0
#185
pratikunterwegs
closed
4 months ago
0
Add a continuous benchmarking workflow
#184
pratikunterwegs
closed
3 months ago
3
Add vignette showing ODE model vectorisation
#183
pratikunterwegs
closed
4 months ago
0
Update output helper functions for nested data.tables?
#182
pratikunterwegs
closed
1 month ago
1
Allow `population` to be a list-like in epidemic models
#181
pratikunterwegs
opened
4 months ago
1
Fix ORCID links
#180
chartgerink
closed
4 months ago
0
Second attempt at C++ implementation of Ebola model
#179
pratikunterwegs
closed
1 month ago
1
Test suites for vectorised ODE model
#178
pratikunterwegs
closed
4 months ago
0
Return simplified data.frame for scalar inputs
#177
pratikunterwegs
closed
4 months ago
0
Vector inputs for ODE models
#176
pratikunterwegs
closed
4 months ago
17
Refactor argument checker functions to cross-checking only
#175
pratikunterwegs
closed
4 months ago
0
Stochastic Ebola model should allow replicates
#174
pratikunterwegs
closed
2 months ago
0
Stochastic Ebola model should have a two level structure
#173
pratikunterwegs
closed
2 months ago
0
Preserve seeds across parameter and event sets for stochastic models
#172
pratikunterwegs
closed
2 months ago
0
vectorise prob_discrete_erlang
#171
TimTaylor
closed
5 months ago
1
Stochastic model should accept list of model component sets
#170
pratikunterwegs
closed
2 months ago
0
Stochastic model functions should accept parameter vectors
#169
pratikunterwegs
closed
2 months ago
0
Export internal model functions
#168
pratikunterwegs
opened
5 months ago
4
ODE model functions should accept list of model component sets
#167
pratikunterwegs
closed
4 months ago
0
ODE model functions should accept vectors of infection parameters
#166
pratikunterwegs
closed
4 months ago
0
Refactoring based on `covr` report
#165
bahadzie
closed
3 months ago
1
Show multiple replicates for Ebola intervention scenarios
#164
pratikunterwegs
closed
2 months ago
0
Show better seed management in Ebola vignette
#163
pratikunterwegs
closed
2 months ago
0
Reconsider R implementations of ODE models
#162
pratikunterwegs
closed
2 months ago
4
Consolidate `**/.gitignore` files
#161
chartgerink
closed
5 months ago
5
Possible API for models
#160
TimTaylor
closed
2 months ago
25
Add an `<epidemic>` class
#159
pratikunterwegs
closed
5 months ago
3
Camp population changes for diphtheria model
#158
pratikunterwegs
closed
5 months ago
1
Add a vignette for the diphtheria model
#157
pratikunterwegs
closed
5 months ago
0
Add <epidemic> class
#156
pratikunterwegs
opened
5 months ago
1
Reduce population validation sensitivity
#155
pratikunterwegs
closed
5 months ago
0
Allow changes in population sizes
#154
pratikunterwegs
closed
5 months ago
0
Restore linter workflow
#153
pratikunterwegs
closed
5 months ago
0
Fixes #127
#152
bahadzie
closed
1 month ago
11
Update finalsize_comparison.Rmd
#151
adamkucharski
closed
5 months ago
0
End of year cleanup
#150
pratikunterwegs
closed
7 months ago
0
End of year cleanup
#149
pratikunterwegs
closed
5 months ago
0
Update vignette titles
#148
pratikunterwegs
closed
7 months ago
0
Vignette labelling
#147
adamkucharski
closed
7 months ago
1
Initial implementation of the diphtheria model
#146
pratikunterwegs
closed
7 months ago
1
Corrections and code streamlining
#145
pratikunterwegs
closed
7 months ago
0
Corrections to Vacamole model
#144
pratikunterwegs
closed
7 months ago
0
Restructure Vacamole model for rate interventions
#143
pratikunterwegs
closed
4 months ago
0
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