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epiverse-trace
/
epidemics
A library of published compartmental epidemic models, and classes to represent demographic structure, non-pharmaceutical interventions, and vaccination regimes, to compose epidemic scenarios.
https://epiverse-trace.github.io/epidemics/
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Initial implementation of the diphtheria model
#146
pratikunterwegs
closed
8 months ago
1
Corrections and code streamlining
#145
pratikunterwegs
closed
8 months ago
0
Corrections to Vacamole model
#144
pratikunterwegs
closed
9 months ago
0
Restructure Vacamole model for rate interventions
#143
pratikunterwegs
closed
5 months ago
0
Replace infection with model in headers
#142
pratikunterwegs
closed
9 months ago
0
Add initial diphtheria model
#141
pratikunterwegs
closed
8 months ago
0
Remove infection class
#140
pratikunterwegs
closed
9 months ago
3
PDF documentation rendering fails on r-universe
#139
Bisaloo
closed
9 months ago
1
Fixes #107 using latest main branch
#138
bahadzie
closed
9 months ago
1
Fixes #107
#137
bahadzie
closed
9 months ago
2
Object print methods
#136
pratikunterwegs
closed
2 months ago
1
Fixes #102: Rename model functions to `model_x()`
#135
bahadzie
closed
9 months ago
2
Ebola model should be compatible with interventions
#134
pratikunterwegs
closed
9 months ago
0
Remove <infection> class
#133
pratikunterwegs
closed
9 months ago
0
Further fixes for the ebola model
#132
pratikunterwegs
closed
9 months ago
4
Vignette on parameter uncertainty
#131
pratikunterwegs
closed
9 months ago
7
Fix for # 100 - Remove model library and access
#130
bahadzie
closed
9 months ago
3
Fixes for Clang >15
#129
pratikunterwegs
closed
10 months ago
3
Add vignette comparing with {finalsize}
#128
pratikunterwegs
closed
9 months ago
9
Add function to calculate timing and size of epidemic peak
#127
pratikunterwegs
closed
2 months ago
1
Improve printing
#126
jamesmbaazam
closed
9 months ago
14
Calculate expected vaccinations and check model correctness
#125
pratikunterwegs
opened
10 months ago
3
remove default value in population function
#124
jamesmbaazam
closed
10 months ago
2
Should `population()` have default values?
#123
jamesmbaazam
closed
10 months ago
1
`intervention()` function returns an extra element that comes as an empty string `""`
#122
Karim-Mane
closed
10 months ago
2
A few remarks
#121
Degoot-AM
closed
2 months ago
4
Fix vaccination rates in vignette
#120
pratikunterwegs
closed
8 months ago
0
Unable to install on MacOS Ventura
#119
jamesmbaazam
closed
10 months ago
9
Threshold for validating a population object.
#118
Degoot-AM
closed
6 months ago
3
Pull latest infrastructure changes from packagetemplate
#117
Bisaloo
closed
10 months ago
3
R0 vs Reff in vignettes
#116
jamesmbaazam
closed
9 months ago
5
Error when installing `epidemics`
#115
CarmenTamayo
closed
10 months ago
8
Model functions take model-specific parameters/arguments
#114
pratikunterwegs
closed
9 months ago
1
Add reference to Readme, fixes #112
#113
pratikunterwegs
closed
10 months ago
1
Update Readme with Li et al. reference for ebola
#112
pratikunterwegs
closed
10 months ago
0
Add time-dependence to ebola model
#111
pratikunterwegs
closed
9 months ago
0
Add hospitalised and funeral compartments to Ebola model
#110
pratikunterwegs
closed
10 months ago
1
Allow interventions to have positive effects
#109
pratikunterwegs
closed
9 months ago
1
Read and interpolate data for parameter time dependence
#108
pratikunterwegs
closed
2 months ago
1
Add sections in pkgdown reference index
#107
Bisaloo
closed
9 months ago
1
<infection> accepts R as a distribution or samples
#106
pratikunterwegs
closed
9 months ago
10
Improve test coverage
#105
pratikunterwegs
closed
4 months ago
1
Add examples to model functions
#104
pratikunterwegs
closed
9 months ago
0
Check and update model fn documentation
#103
pratikunterwegs
closed
8 months ago
1
Rename model functions to `model_x()`
#102
pratikunterwegs
closed
9 months ago
0
Randomise initial exposed/infectious in Erlang compartments in Ebola model
#101
pratikunterwegs
closed
9 months ago
0
Remove model library and access
#100
pratikunterwegs
closed
9 months ago
1
Improve printing for {epidemics} classes
#99
pratikunterwegs
closed
9 months ago
1
Add easier plotting options (geoms?) for events
#98
pratikunterwegs
opened
11 months ago
0
Correct intervention on contacts, fixes #94
#97
pratikunterwegs
closed
10 months ago
1
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