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epiverse-trace
/
epidemics
A library of published compartmental epidemic models, and classes to represent demographic structure, non-pharmaceutical interventions, and vaccination regimes, to compose epidemic scenarios.
https://epiverse-trace.github.io/epidemics/
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Fix Readme.Rmd for intervention
#96
pratikunterwegs
closed
11 months ago
0
Threshold dependent interventions
#95
pratikunterwegs
closed
3 months ago
1
Correct contact interventions
#94
pratikunterwegs
closed
11 months ago
0
Allow parameter time dependence
#93
pratikunterwegs
closed
11 months ago
4
Pass parameter time-dependence functions
#92
pratikunterwegs
closed
11 months ago
0
Implement interventions on model rates
#91
pratikunterwegs
closed
11 months ago
0
Add basic accessor function
#90
pratikunterwegs
closed
1 year ago
0
Implement R only models
#89
pratikunterwegs
closed
1 year ago
11
Add installation notes, fixes #63, fixes #78
#88
pratikunterwegs
closed
1 year ago
0
Compress documentation
#87
pratikunterwegs
closed
9 months ago
1
Make epidemic functions directly available
#86
pratikunterwegs
closed
1 year ago
0
Add hospitalised and dead/funeral compartments and transmission to ebola model
#85
pratikunterwegs
closed
11 months ago
0
Add benchmarking vignette
#84
pratikunterwegs
closed
1 year ago
0
Update vignettes with deSolve events
#83
pratikunterwegs
closed
10 months ago
1
Pass interventions and vaccinations as deSolve events
#82
pratikunterwegs
closed
10 months ago
1
Rename and expose C++ model functions directly
#81
pratikunterwegs
closed
1 year ago
0
Add R equivalent of Vacamole model
#80
pratikunterwegs
closed
1 year ago
0
Add R equivalent of default model
#79
pratikunterwegs
closed
1 year ago
0
Add Windows installation instructions
#78
pratikunterwegs
closed
1 year ago
0
Correct cumulative intervention implementation code
#77
pratikunterwegs
closed
1 year ago
0
Incorporating time-varying transmission dependent on climate (or other) data
#76
adamkucharski
closed
4 months ago
7
Interdependence of parameters within `epidemic()`
#75
TimTaylor
closed
1 year ago
4
Consider using {deSolve} in {epidemics}
#74
pratikunterwegs
closed
1 year ago
1
Epidemic C++ models should accept `<infection>` objects
#73
pratikunterwegs
closed
1 year ago
1
Add class accessor functions
#72
pratikunterwegs
closed
1 year ago
0
Ebola model based on Getz and Dougherty
#71
pratikunterwegs
closed
1 year ago
9
Add contributors and reviewers
#70
pratikunterwegs
closed
1 year ago
0
Add a package design vignette
#69
pratikunterwegs
closed
6 months ago
2
Describe ebola model
#68
pratikunterwegs
closed
10 months ago
1
Fix partial matching
#67
pratikunterwegs
closed
1 year ago
0
Partial matching
#66
TimTaylor
closed
1 year ago
4
Implement overlapping NPIs
#65
pratikunterwegs
closed
1 year ago
0
Remove covr from Suggests
#64
Bisaloo
closed
1 year ago
1
Unable to install epidemics on MacBook
#63
jamesmbaazam
closed
1 year ago
9
Benchmarking R-only and Rcpp implementations
#62
pratikunterwegs
closed
9 months ago
6
Fix partial matching check_args_default.R
#61
TimTaylor
closed
1 year ago
1
Add spell-checking
#60
pratikunterwegs
closed
1 year ago
0
Disallow matrix initialisation of multi-dose vaccination
#59
pratikunterwegs
closed
7 months ago
2
Infection should hold rates only
#58
pratikunterwegs
closed
10 months ago
1
Add input checking helper functions
#57
pratikunterwegs
closed
1 year ago
4
Option to count deaths in epidemic_size()
#56
pratikunterwegs
closed
1 year ago
0
Add multi-dose functionality for no_vaccination()
#55
pratikunterwegs
closed
1 year ago
0
Add Vacamole model to {epidemics}
#54
pratikunterwegs
closed
1 year ago
2
Add two-dose vaccination
#53
pratikunterwegs
closed
1 year ago
0
Add Vacamole model as header file
#52
pratikunterwegs
closed
1 year ago
0
Vignette for Vacamole model use
#51
pratikunterwegs
closed
1 year ago
0
Add Vacamole to model library file
#50
pratikunterwegs
closed
1 year ago
0
General helper function to generate template header for new model
#49
pratikunterwegs
closed
1 year ago
1
General helper function to check vaccination
#48
pratikunterwegs
closed
1 year ago
0
General helper function to check intervention
#47
pratikunterwegs
closed
1 year ago
0
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