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epiverse-trace
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episoap
[Not published - under active development] A Store of Outbreak Analytics Pipelines Provided as Rmarkdown Report Templates
https://epiverse-trace.github.io/episoap/
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Update pkg name
#57
Bisaloo
closed
1 year ago
0
Remove workflows handled by organisation
#56
Bisaloo
closed
1 year ago
1
Add ignore_unused_imports fct
#55
Bisaloo
closed
1 year ago
1
Set up google analytics
#54
Bisaloo
closed
1 year ago
0
Update README with new template name
#53
Bisaloo
closed
1 year ago
0
Create article with list of templates, their description and their code
#52
Bisaloo
closed
1 year ago
1
Consider creating a rmarkdown::draft() wrapper with a "lang" argument
#51
Bisaloo
opened
1 year ago
0
Update links in DESCRIPTION
#50
Bisaloo
closed
1 year ago
0
Clarify plot legend about latest Rt estimates
#49
Bisaloo
closed
1 year ago
0
Misc fixes
#48
Bisaloo
closed
1 year ago
0
Remove brittle row_spec() instruction
#47
Bisaloo
closed
1 year ago
0
Mention related projects
#46
Bisaloo
closed
1 year ago
7
Fix POSIXt issue
#45
Bisaloo
closed
1 year ago
0
Standardize more chunk and var names across children
#44
Bisaloo
closed
1 year ago
1
Rename package to episoap
#43
Bisaloo
closed
1 year ago
0
Polish & document rmarkdown shiny interface
#42
Bisaloo
closed
1 year ago
1
Define scope and use case of each report more clearly
#41
Bisaloo
opened
1 year ago
2
Cite packages with grateful
#40
Bisaloo
closed
1 year ago
1
Uniformise text and feel between Rt estimation packages
#39
Bisaloo
closed
1 year ago
1
Add citation to all package in templates
#38
Bisaloo
closed
1 year ago
1
Add cloud-hosted online demo of reports
#37
Bisaloo
opened
1 year ago
1
Add barebones contributing guide
#36
Bisaloo
closed
1 year ago
1
EpiNow2: Short time-series for regional estimates
#35
seabbs
closed
1 year ago
1
Offer output as pdf document or slides
#34
Bisaloo
opened
1 year ago
0
Document rmarkdown parameters in a standard way
#33
Bisaloo
closed
1 year ago
1
Package template reports
#32
Bisaloo
closed
1 year ago
1
Add epiparameter & EpiNow2
#31
Bisaloo
closed
1 year ago
10
Add shiny front-end
#30
Bisaloo
closed
1 year ago
0
Standardized results for transmissibility analyses
#29
thibautjombart
opened
1 year ago
2
Analyses using EpiEstim
#28
thibautjombart
closed
1 year ago
0
Standardize common items
#27
thibautjombart
closed
1 year ago
0
Add R0 chunk
#26
Bisaloo
closed
1 year ago
0
Implement: epicurve to R0
#25
Bisaloo
closed
1 year ago
1
EpiEstim: incidence2 inputs
#24
thibautjombart
opened
1 year ago
0
Adding estimations of R from r
#23
thibautjombart
closed
1 year ago
0
Add: conversion from r to R
#22
thibautjombart
closed
1 year ago
0
Adding section on serial interval distribution
#21
thibautjombart
closed
1 year ago
0
Adding placeholder sections
#20
thibautjombart
closed
1 year ago
0
Add placeholders for future sections
#19
thibautjombart
closed
1 year ago
0
Gather 1st round of user feedback
#18
thibautjombart
closed
1 year ago
0
Document transmissibility pipeline
#17
thibautjombart
closed
1 year ago
0
Add readepi example
#16
thibautjombart
opened
2 years ago
0
Add linelist data example
#15
thibautjombart
closed
1 year ago
1
Add infrastructure: targets
#14
thibautjombart
opened
2 years ago
0
Add infrastructure: orderly
#13
thibautjombart
opened
2 years ago
0
Add infrastructure: reportfactory
#12
thibautjombart
opened
2 years ago
0
Add support for epiparameters
#11
thibautjombart
closed
1 year ago
1
Add inputs for serial interval
#10
thibautjombart
closed
1 year ago
0
Styling: custom style
#9
thibautjombart
opened
2 years ago
1
externalize code to children
#8
thibautjombart
closed
1 year ago
1
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