A collection of packages, scripts, and tools for electron microscopy data analysis supported by the National Center for Electron Microscopy facility of the Molecular Foundry.
Read the documentation: https://openncem.readthedocs.io/en/latest/.
The newest version can be installed using pip:
>> pip install ncempy
To ensure dependencies for the EDS tomography reconstruction are installed:
>> pip install ncempy[edstomo]
The openNCEM collection comes with different components, described below.
ncempy openNCEM's python package to provide various algorithms and routines to process or simulate images.
tools The tools build leveraging the algorithms and routines provided in the libraries/packages. They are subordered by the different problems they address.
ncem2png Extracts a PNG file from the data in a SER, DM3, or DM4 file. For 3D and 4D files, it tries to extract an image from the middle of the third and forth dimension.
``ncempy`` is dual licensed under GPLv3 and MIT. The io module is the only part
released under MIT to improve interoperability with other packages.
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License
along with this program. If not, see https://www.gnu.org/licenses/.