erhard-lab gedi issues - Githubissues

erhard-lab / gedi

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Question about the overlap strategy in Grand-SLAM

#20 ice-cold opened 1 month ago
0
PriceCollectSufficientStatistic error: Index 51 out of bounds for length 51

#19 dougbarrows opened 2 months ago
0
Additional GRAND-SLAM run failure with "Error: java.lang.RuntimeException: Could not run gedi.slam.javapipeline.SlamRates@2cb4ef60 Could not run gedi.slam.javapipeline.SlamRates@2cb4ef60"

#18 gval38 opened 2 months ago
0
Genomic name does not exist in config/genomic

#17 ericmalekos opened 3 months ago
0
PriceOrfInference error: Index 0 out of bounds for length 0

#16 pkohvaei opened 4 months ago
0
Price error Input not sorted on sorted BAM file

#15 pkohvaei closed 4 months ago
3
Installation issue

#14 ericmalekos opened 4 months ago
0
Intronic reads discarded?

#13 ValeriaFam opened 4 months ago
2
Why is readcount not an integer?

#12 ValeriaFam closed 5 months ago
1
GRAND-SLAM failed with the error java.lang.RuntimeException: Could not run gedi.slam.javapipeline.SlamRates@6b4b98f

#11 dhebenstreit closed 4 months ago
6
gedi -e FastqFilter -D -overwrite -ld mESC.nos4U.C.readlengths.tsv -min 18 mESC.nos4U.C.fastq This script doesn't work.

#10 Lilycream opened 5 months ago
2
Hi~How can I get the cit file?

#9 LongYuan0529 closed 5 months ago
1
Are CSI bam indexes accepted?

#8 rwhetten closed 5 months ago
6
I have not done no4sU sequencing, can I use grand-slam?

#7 bioinformatica closed 6 months ago
3
Prism unable to run Annotate Program

#6 rishyashrung opened 6 months ago
0
Cannot download PRICE, releases tab link doesn't work

#5 danielrebib closed 7 months ago
1
CIT files from BAM files generated using STAR solo

#4 aishwarya-gondane opened 7 months ago
2
GRAND-SLAM failed with the error "java.lang.RuntimeException: java.lang.RuntimeException: Could not run gedi.slam.javapipeline.SlamRates@78d34d4"

#3 aishwarya-gondane opened 7 months ago
8
Installation issue

#2 danielrebib closed 7 months ago
2
The previous issue has been deleted?

#1 L1angyan closed 7 months ago
1