Closed evogytis closed 10 years ago
I don't have much faith in blob plots like the one in Rabadan et al (mostly for precision reasons) and I'm not going to run our data with MrBayes in order to use GiRaF. Tanglegrams are pointless, because we can infer inter-lineage reassortments and visualize them in a more interpretable way (Figure 6) than an 8x7 grid of tanglegrams could.
I completely agree with you here.
I don't think you need MrBayes trees to run Giraf, I think you can use a premade tree set ( but I've not looked at Giraf in a while) but you might need to strip out the extra node and branch annotations in the beast trees. Mojca ran Giraf I think, and we are both coming tomorrow (Friday).
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On 14 May 2014, at 17:25, "evogytis" notifications@github.com wrote:
I don't have much faith in blob plots like the one in Rabadan et al (mostly for precision reasons) and I'm not going to run our data with MrBayes in order to use GiRaF. Tanglegrams are pointless, because we can infer inter-lineage reassortments and visualize them in a more interpretable way (Figure 6) than an 8x7 grid of tanglegrams could.
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