Closed evogytis closed 10 years ago
There's a minor bug where the script will calculate LD after "cleaning up" haplotypes. That has an effect that when there's a clade-wide gap in the alignment it will only use haplotypes that do not have a gap, which leads to inflated LD for NA.
There's a minor bug where the script will calculate LD after "cleaning up" haplotypes. That has an effect that when there's a clade-wide gap in the alignment it will only use haplotypes that do not have a gap, which leads to inflated LD for NA.