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fabfabBesnard
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Parallel-Variant-Calling
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Variant lenght in final tab
#42
maliktalbi
closed
2 years ago
0
option --masked-genome
#41
maliktalbi
closed
2 years ago
0
Create params for --bind option in Singularity profile
#40
maliktalbi
closed
2 years ago
0
If annotationgff, check maked genome still working
#39
maliktalbi
closed
2 years ago
0
Pipeline doesn't regognize fils in /project in calculus
#38
maliktalbi
closed
2 years ago
1
Error process metasv with singularity
#37
maliktalbi
opened
2 years ago
0
Create SLURM profil for psmn
#36
maliktalbi
opened
2 years ago
0
Put everything in a docker
#35
maliktalbi
opened
2 years ago
0
Modif ReadMe
#34
maliktalbi
opened
2 years ago
0
Clean code
#33
maliktalbi
opened
2 years ago
0
Update google doc
#32
maliktalbi
opened
2 years ago
0
Updates singularity profile for calculus
#31
maliktalbi
closed
2 years ago
0
parameters for --minsvlen and --maxsvlen in Metasv
#30
maliktalbi
closed
2 years ago
0
Create a docker with Snpeff, Bedtools and the custom python parser
#29
maliktalbi
closed
2 years ago
0
Label creation for Sampling in psmn profile
#28
maliktalbi
closed
2 years ago
0
Abnormal number of alignment at the end
#27
maliktalbi
closed
2 years ago
1
Use masked genome for final result
#26
maliktalbi
closed
2 years ago
0
Find correct option for metasv
#25
maliktalbi
closed
2 years ago
0
Multi run per sample
#24
maliktalbi
closed
2 years ago
1
Docker update
#23
fabfabBesnard
closed
2 years ago
0
--sampletable option
#22
maliktalbi
closed
2 years ago
0
Sampling reads script
#21
fabfabBesnard
closed
2 years ago
0
Structural viariant calling breakdancer and lumpy doesn't work with multiple file
#20
maliktalbi
closed
2 years ago
0
problem using multiple reads
#19
maliktalbi
closed
2 years ago
1
option --sample bug
#18
maliktalbi
closed
2 years ago
1
fastq process skipped
#17
maliktalbi
closed
2 years ago
0
Conda : path too long
#16
maliktalbi
closed
2 years ago
0
full path repository for script
#15
maliktalbi
closed
2 years ago
0
--outdir parameter
#14
maliktalbi
closed
2 years ago
1
To do list: week n°8
#13
fabfabBesnard
closed
2 years ago
0
Create a conda profile for developer
#12
fabfabBesnard
closed
2 years ago
1
Update Nextflow profiles
#11
fabfabBesnard
closed
2 years ago
1
Docker: create a Picard docker ?
#10
fabfabBesnard
opened
2 years ago
1
Docker: Create HTSeq docker
#9
fabfabBesnard
opened
2 years ago
1
chr27 reads selected by mapping
#8
maliktalbi
opened
2 years ago
0
Create an option to activate the sampling script in a nextflow pipe
#7
fabfabBesnard
closed
2 years ago
2
Sampling reads script
#6
maliktalbi
closed
2 years ago
4
Modify read input options in nextflow config to allow several sequencing runs for the same sample
#5
fabfabBesnard
closed
2 years ago
0
Input Reads location is not recognized by Nextflow
#4
fabfabBesnard
closed
2 years ago
1
Nextflow: create an adapated profile for PC (not clusters)
#3
fabfabBesnard
closed
2 years ago
1
Virtual environments for portability
#2
fabfabBesnard
closed
2 years ago
0
Correct data sampling script
#1
fabfabBesnard
closed
2 years ago
0