fair-workflows fairworkflows issues

fair-workflows / fairworkflows

A python library for constructing, modifying and publishing scientific workflows described using semantic technologies.

Apache License 2.0

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issues

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Bump jinja2 from 2.11.3 to 3.1.3

#202 dependabot[bot] opened 8 months ago
0
Upgrade `nanopub` to v2.0.0

#201 vemonet opened 1 year ago
0
Error when trying to return a tuple or an object in a fairstep

#200 vemonet opened 1 year ago
0
Using Type annotations in functions annotated by @is_fairstep raises issues

#199 vemonet opened 1 year ago
0
CITATION.cff fix and automatic validation of your citation metadata

#198 abelsiqueira opened 2 years ago
0
API reference in documentation is empty

#197 svenvanderburg opened 3 years ago
0
Add link to user documentation readme

#196 svenvanderburg closed 3 years ago
0
Add docs

#195 svenvanderburg closed 3 years ago
0
Add notebook for workflow building diagram

#194 svenvanderburg closed 3 years ago
0
Integrate manual assistant

#193 dsmits closed 3 years ago
1
Add documentation for prov.py

#192 svenvanderburg closed 3 years ago
0
fw.display() function doesn't show all variables of a workflow

#191 rcelebi opened 3 years ago
0
fw.display() function doesn't show inputs/outputs of a workflow

#190 rcelebi closed 3 years ago
1
Allow no type annotation

#189 svenvanderburg closed 3 years ago
0
Allow step without type hints

#188 svenvanderburg closed 3 years ago
0
Add documentation to StepRetroProv & WorkflowRetroProv

#187 raar1 closed 3 years ago
0
Issue185 stepretroprov workflowretroprov

#186 raar1 closed 3 years ago
0
Improve StepRetroProv & WorkflowRetroProv

#185 svenvanderburg closed 3 years ago
0
Fair prov object

#184 svenvanderburg closed 3 years ago
1
Update error message for publish_as_nanopub

#183 raar1 closed 3 years ago
1
Broken dependency rdf2dot in python==3.8.0

#182 svenvanderburg opened 3 years ago
0
Fix retrospective logging

#181 svenvanderburg closed 3 years ago
0
Check if this (TODO) code can be fixed yet

#180 raar1 closed 3 years ago
2
Reintroduce autopublishing of steps

#179 svenvanderburg closed 3 years ago
0
Improve display method

#178 svenvanderburg closed 3 years ago
0
.execute() should return a FairProv object

#177 svenvanderburg closed 3 years ago
0
Use noodles.workflows.from_call for execute method

#176 svenvanderburg closed 3 years ago
0
Missing steps bug in is-fairworkflow decorator

#175 svenvanderburg closed 3 years ago
0
Fix missing steps bug in is-fairworkflows decorator

#174 svenvanderburg closed 3 years ago
0
Update coveralls badge for new coveralls endpoint

#173 svenvanderburg closed 3 years ago
1
Improve error message when wrongly using is_fairworkflow decorator

#172 svenvanderburg closed 3 years ago
0
Retrospective prov should mirror Prospective prov

#171 raar1 closed 3 years ago
1
Issue164 add language to rdf

#170 raar1 closed 3 years ago
1
Update notebook for new way of instantiating fair workflow objects fr…

#169 svenvanderburg closed 3 years ago
0
Fix retrospective provenance tracking

#168 svenvanderburg closed 3 years ago
1
Bind the input arguments to the execute method

#167 svenvanderburg closed 3 years ago
0
Issue163 tuple for return semantic types

#166 raar1 closed 3 years ago
1
publish_as_nanopub() broken by requirement to publish all steps individually

#165 raar1 closed 3 years ago
3
Add language/version to Step RDF

#164 raar1 closed 3 years ago
3
Use tuple for multiple output semantic types in is_fairstep decorator

#163 raar1 closed 3 years ago
0
Map python computational types to e.g. XSD

#162 raar1 opened 3 years ago
0
Add semantic typing to is_fairworkflow decorator

#161 raar1 closed 3 years ago
3
Inputs should not be bound to workflow instantiated with is_fairworkflow

#160 svenvanderburg closed 3 years ago
0
Throw TypeError if workflow does not return a promise

#159 svenvanderburg closed 3 years ago
0
Issue143 decorator semantic types

#158 raar1 closed 3 years ago
2
Update to nanopub 1.2.2

#157 raar1 closed 3 years ago
0
Adapt execution so that it doesn't require serlialization to database

#156 raar1 closed 3 years ago
1
Issue90 generate retroprov nanopubs

#155 raar1 closed 3 years ago
1
Fix bug: #130 Steps without URI are reffered to as <None> in workflow RDF

#154 svenvanderburg closed 3 years ago
0
Independent step publications

#153 svenvanderburg closed 3 years ago
0