faircloth-lab phyluce issues

faircloth-lab / phyluce

software for UCE (and general) phylogenomics

http://phyluce.readthedocs.org/

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issues

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An error occurred during installation

#254 qilu521 opened 3 years ago
0
SNP calling

#253 leonvarhan closed 3 years ago
2
Memory issue - phyluce_probe_remove_duplicate_hits_from_probes_using_lastz

#252 karlyhiggins opened 3 years ago
1
gblocks error - bad CPU type in executable

#251 Otorongo1 opened 3 years ago
12
SPades assembly issue

#250 hutumpyancha closed 3 years ago
13
Is it possible to merge assemblies results from Spades and Trinity to get more contigs? (phyluce_assembly_match_contigs_to_probes issue)

#249 Danisystematic closed 3 years ago
2
mapping workflow error

#248 mprebus opened 3 years ago
1
unmix fasta reads errors

#247 michaelforthman opened 3 years ago
2
Missing input file when doing a workflow mapping

#246 sadbirder closed 3 years ago
3
Logging error phyluce_align_get_only_loci_with_min_taxa

#245 jbernst closed 3 years ago
2
phyluce_probe_run_multiple_lastzs_sqlite v1.7 issues

#244 michaelforthman opened 3 years ago
2
Adjusting Mafft parameters, gappy alignments

#243 StephenBaca opened 3 years ago
2
remove_duplicate_hits_from_probes stuck for days

#242 sihellem opened 3 years ago
1
gatk IndelRealigner causing core dumps

#241 BirdmanRidesAgain opened 3 years ago
5
issue spades: Expected assembly files were not found in output.

#240 haxacloruro closed 3 years ago
4
I am new with Phyluce and I need your help, please

#239 luishdez35 opened 3 years ago
6
Add missing data designators

#238 jkorstia closed 3 years ago
15
phyluce_align_add_missing_data_designators fails to run

#237 shofmon88 closed 3 years ago
2
How to symlink extracted UCE loci from genomes into contigs file

#236 BirdmanRidesAgain closed 3 years ago
2
Problem installing phyluce 1.7.1

#235 haxacloruro closed 3 years ago
2
Adding Barcode+Adapter Removed SRA Sequences into Phyluce

#234 alexkrohn opened 3 years ago
4
phyluce_assembly_match_contigs_to_probes - AttributeError: 'NoneType' object has no attribute 'groups'

#233 BirdmanRidesAgain opened 3 years ago
4
Easy Way to Update Contig Symlinks to New Path?

#232 alexkrohn closed 3 years ago
2
phyluce_probe_get_multi_merge_table syntax error

#231 RaulGoch closed 3 years ago
3
Fix location of triCas1.fasta

#230 Zachary-Muscavitch closed 3 years ago
0
made directory structure consistent

#229 Zachary-Muscavitch closed 3 years ago
0
Picard Dependency Issue - CleanSam truncates .bam files

#228 BirdmanRidesAgain closed 3 years ago
4
RAxML Output has Many Loci with Only Undetermined Values

#227 alexkrohn closed 3 years ago
3
phyluce_align_format_concatenated_phylip_for_paml not working on the new release

#226 fvfreitas opened 3 years ago
0
phyluce_align_get_only_loci_with_min_taxa removes too many alignments

#225 alexkrohn closed 3 years ago
5
"phyluce_snp_bwa_multiple_align" command missing in phyluce 1.7.1

#224 jasonleebrown opened 3 years ago
2
phyluce_snp_convert_vcf_to_structure invalid literal

#223 heather340 opened 3 years ago
4
phyluce_workflow phasing issue: java.lang.OutOfMemoryError: Java heap space

#222 lpnunez opened 3 years ago
8
phyluce_probe_slice_sequence_from_genomes: KeyError: 'chr1'

#221 nealplatt closed 3 years ago
4
phyluce_align_concatenate_alignments not found

#220 GillianGibb closed 3 years ago
4
Problem with phyluce_probe_run_multiple_lastzs_sqlite

#219 lnyawen closed 3 years ago
4
Fix version header when not in git

#218 brantfaircloth closed 3 years ago
8
Cleanup spades output

#217 brantfaircloth closed 3 years ago
1
Check taxon names for proper sqlite column headers

#216 brantfaircloth closed 3 years ago
0
minor comments on the tutorial

#215 crsl4 closed 3 years ago
1
Assembly not working with tutorial data

#214 leonvarhan closed 3 years ago
4
Some phased fasta with names starting with _R_?

#213 ymilesz closed 3 years ago
2
error with phyluce_genetrees_run_raxml_genetrees

#212 kkmills closed 3 years ago
3
Problem with phyluce_align_seqcap_align

#211 claudiavaga closed 3 years ago
5
phyluce_assembly_match_contigs_to_probes - high volume of UCE loci removed for matching multiple contigs

#210 idanaughton closed 3 years ago
2
Cannot connect to the conda channel

#209 yksun closed 3 years ago
3
Illumiprocessor - naming issue

#208 MaxTBC closed 3 years ago
13
phyluce_assembly_match_contigs_to_probes

#207 quattrinia closed 3 years ago
1
Error with match contigs to probe: using scafSeq files as input

#206 nonnohasegawa closed 4 years ago
2
phyluce_snp_bwa_multiple_align error

#205 idanaughton closed 3 years ago
2

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