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faircloth-lab
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phyluce
software for UCE (and general) phylogenomics
http://phyluce.readthedocs.org/
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Insufficient memory fir the java runtime environment to continue. NMAP- Native memory allocation failed
#304
Sarangkrr
opened
1 year ago
0
Mapping against a Trinity genome assembly?
#303
Trinity2018
opened
1 year ago
0
phasing workflow failed - one of the commands exited with non-zero exit code; note that snakemake uses bash strict mode!
#302
andreluizherpeto
closed
1 year ago
3
phyluce_assembly_extract_contigs_to_barcodes
#301
jovana03
opened
1 year ago
1
non-UCE probes, slice UCE probes from genome
#300
crcardenas
closed
1 year ago
9
Using harvested genome sequences in downstream analyses
#299
alexfranzen
closed
1 year ago
3
phyluce_probe_run_multiple_lastzs_sqlite error/bug
#298
crcardenas
closed
1 year ago
5
phyluce not installing on macOS aarch64
#297
macrinl
closed
1 year ago
4
phyluce failed to find reads during phasing workflow
#296
andreluizherpeto
closed
2 weeks ago
6
phyluce_assembly_match_contigs_to_probes stopped working
#295
marianamateos
opened
1 year ago
1
exploding the monolithic fasta by locus?
#294
lcgraber
closed
1 year ago
3
phasing workflow: insufficient memory for Java Runtime Environment to continue
#293
jbernst
closed
1 year ago
5
phyluce_snp_bwa_multiple_align
#292
TiagoBelintani
closed
1 year ago
1
Using the --continue option from spades
#291
aureliendejode
opened
1 year ago
1
Problem installing phyluce using miniconda
#290
SilAdSe
closed
1 year ago
3
KeyError with phyluce_probe_slice_sequence_from_genomes
#289
sunandan-dasgupta
closed
1 year ago
13
Mapping of reads (phyluce_snp_bwa_multiple_align)
#288
irbinveliz
opened
1 year ago
5
Illumiprocessor not removing adapters and barcodes?
#287
jbernst
closed
1 year ago
30
Phyluce downloading error
#286
Nomada-atra
opened
1 year ago
2
Obtaining a final .vcf file with ambiguities for diploid organisms
#285
marianamazzochi
opened
1 year ago
5
<jemalloc>: Error in malloc(): out of memory
#284
marianamazzochi
opened
2 years ago
8
ValueError: Invalid alphabet, 'DNA'
#283
a-cabrero
closed
2 years ago
9
Illumiprocessor error: configparser.MissingSectionHeaderError: File contains no section headers
#282
marianamazzochi
closed
2 years ago
40
Phyluce on Apple M-series Processors
#281
coliverbrown
closed
1 year ago
12
Error during install
#280
rdriver
closed
2 years ago
3
internal trimming - no such file or directory
#279
crcardenas
closed
2 years ago
3
could not find conda environment: phylum-1.7.1
#278
luzeocho
opened
2 years ago
1
phyluce_assembly_assemblo_spades memory issues with tmp directory location
#277
NmHamilton
closed
2 years ago
4
uce probe for plant
#276
conniecl
closed
2 years ago
0
Upscaling phyluce for large datasets
#275
karlyhiggins
opened
2 years ago
1
Issue in "phyluce_assembly_get_match_counts"
#274
claudiavaga
closed
2 years ago
1
phyluce_assembly_assemblo_spades no contig.fasta file
#273
karlyhiggins
closed
2 years ago
5
Error in "phyluce_assembly_match_contigs_to_probes"
#272
kq1986
closed
2 years ago
3
Error in workflow mapping
#271
sallesmath
opened
2 years ago
2
Add "phylip-relaxed" to phyluce_align_extract_taxa_from_alignments
#270
brantfaircloth
opened
2 years ago
0
contig correction changing bcftools flags
#269
emilyostrow
closed
2 years ago
3
Naming issue - Illumiprocessor config file
#268
sallesmath
closed
2 years ago
3
How to know which version of phyluce is installed on a computer?
#267
Ruben9161
closed
2 years ago
1
using phyluce_assembly_match_contigs_to_probes on phased sequences
#266
idanaughton
closed
2 years ago
3
error in Final data matrices
#265
luishdez35
closed
2 years ago
3
Workflows: phasing.conf contig paths
#264
StephenBaca
closed
2 years ago
7
Issue in the assembly
#263
luishdez35
closed
2 years ago
1
Problem with phyluce_assembly_get_match_counts
#262
ratonvaquero
closed
2 years ago
6
phyluce_align_get_only_loci_with_min_taxa
#261
solenopsis1840
closed
2 years ago
8
Issue in Quality Control
#260
luishdez35
opened
2 years ago
2
sample name issue when mapping against one ref with phyluce_snp_bwa_multiple_align
#259
leonvarhan
opened
3 years ago
1
phyluce cannot get fasta files for samples
#258
hutumpyancha
closed
2 years ago
5
phyluce_assembly_assemblo_spades memory allocation issue on cluster
#257
mprebus
opened
3 years ago
4
Phyluce_assembly_match_contigs_to_probes - 'NoneType' object has no attribute 'groups' error
#256
hutumpyancha
opened
3 years ago
2
phasing workflow output question
#255
Motikuko
closed
3 years ago
6
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