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fboehm
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qtl2pleio
Testing pleiotropy vs. separate QTL in multiparental populations
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Reword README and vignette sections
#47
fboehm
opened
3 years ago
0
Equation rendering in README contains misplaced asterisks
#46
fboehm
closed
3 years ago
1
Update README
#44
fboehm
opened
3 years ago
2
CRAN and LTO issue
#43
fboehm
closed
3 years ago
1
Finish writing vignette for one-QTL scans
#42
fboehm
opened
3 years ago
1
Add tests for perms function
#41
fboehm
opened
3 years ago
0
Fix wording in d-variate, d-QTL scan vignette
#40
fboehm
opened
3 years ago
0
Use C++ to write faster scan functions
#39
fboehm
opened
4 years ago
3
Document C++ functions
#38
fboehm
opened
4 years ago
2
Check computing time for boot_pvl relative to scan_pvl
#37
fboehm
closed
4 years ago
3
clean up scan_pvl and boot_pvl code
#36
fboehm
closed
4 years ago
1
Fix find_pleio_peak_tib function
#35
fboehm
closed
4 years ago
0
fix vignettes
#34
fboehm
closed
4 years ago
2
add bayes factor calcs
#33
fboehm
closed
4 years ago
1
Add a vignette to explain profile LOD plots
#32
fboehm
opened
4 years ago
0
Explain how I used feedback when I next submit to CRAN
#31
fboehm
closed
4 years ago
0
Decide which data to include in package
#30
fboehm
closed
4 years ago
0
fix citations in Recla vignette
#29
fboehm
opened
4 years ago
0
Use base 10 log instead of natural base
#28
fboehm
closed
5 years ago
1
Installation problem
#27
HongHe0123
closed
5 years ago
9
Update README.Rmd
#26
fboehm
closed
5 years ago
1
update examples and tests after code changes for version 1.1.0
#25
fboehm
closed
5 years ago
1
tidy_scan_pvl does not deal with more than two traits
#24
HongHe0123
closed
5 years ago
2
How to "Create a profile LOD plot to visualize results of two-dimensional scan"?
#23
HongHe0123
closed
5 years ago
2
Not able to install the package qtl2peio
#22
HongHe0123
closed
5 years ago
4
Use rstudio/pins R package when downloading files
#21
fboehm
closed
4 years ago
1
Fixes to paper.bib
#20
kyleniemeyer
closed
5 years ago
1
Consider moving recla vignette to inst/ directory
#19
fboehm
closed
5 years ago
1
Need print methods for S3 objects that are intermediate outputs from qtl2 and qtl2pleio
#18
fboehm
opened
5 years ago
1
two small changes
#17
kbroman
closed
5 years ago
1
README: suppress warnings and messages when loading packages
#16
fboehm
closed
5 years ago
1
README: add text to explain every section
#15
fboehm
closed
5 years ago
1
Describe results for scan1 outputs
#14
fboehm
closed
5 years ago
2
Explain 2d scan in README.Rmd
#13
fboehm
closed
5 years ago
1
Changes to ReadMe
#12
kbroman
closed
5 years ago
1
Fix @details section for scan_pvl()
#11
fboehm
closed
5 years ago
1
How to extract from addcovar input a matrix with linearly independent columns?
#10
fboehm
closed
5 years ago
2
Add option to do two-dimensional scan with interaction covariates (ie, interact with founder allele probs)
#9
fboehm
opened
5 years ago
0
Enable use of multiple cores
#8
fboehm
closed
5 years ago
1
Add code to check id names across different input objects and use only those subjects present in all objects
#7
fboehm
closed
5 years ago
1
Need unit tests for proper handling of checking on identical ordering of subject names
#6
fboehm
closed
5 years ago
2
Need scan function option for haley Knott regression, ie, without genetic random effect
#5
fboehm
closed
5 years ago
1
Need unit tests for devel branch Cpp functions
#4
fboehm
closed
5 years ago
1
calc_lrt is incompatible with new output structure from scan_pvl
#3
fboehm
closed
6 years ago
1
tests fail in v 0.1.1
#2
fboehm
closed
6 years ago
0
Vignette code fails
#1
fboehm
closed
6 years ago
0