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fiberseq / fibertools-rs

Tools for fiberseq data written in rust.
https://fiberseq.github.io/fibertools/fibertools.html
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Uncomment compile line #12

Closed lvclark closed 1 year ago

lvclark commented 1 year ago

I tried building the container today and found that fs wasn't on the path when I was done. I uncommented the cargo install line and it works now.

lvclark commented 1 year ago

Not adding to the pull request since you might not want to change things exactly the way I did, but I found that it wouldn't run after being converted to Apptainer since ft was installed in /root and Apptainer doesn't have access to that. So I changed the line to

RUN cargo install --path . --root /usr/local
mrvollger commented 1 year ago

I like this idea a lot! Can you add it to the PR?

lvclark commented 1 year ago

Sure, I have added the path! I also installed HTSlib to make it easier to pipe to bgzip from ft extract.