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fiberseq / fibertools-rs

Tools for fiberseq data written in rust.
https://fiberseq.github.io/fibertools/fibertools.html
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pyft: Missing FIRE precision scores for MSPs in pyft.Ranges() class #41

Closed aman62000 closed 8 months ago

aman62000 commented 8 months ago

There is currently no way to access the precision scores when accessing fibers with pyft, requires the use of pysam 'aq' tag in order to get individual fiber FIRE precision value information.

pyft version 0.1.12

mrvollger commented 8 months ago

I have added the ability in a branch called footprint, which you can install with:

pip install -e 'git+https://github.com/fiberseq/fibertools-rs.git@footprint#egg=pyft&subdirectory=py-ft'

but I don't have time to test so please try it out and share with me if it is working.

mrvollger commented 8 months ago

the data will be in fiber.msp.qual