This project is an ImageJ plugin for Google's microscope image focus quality classifier.
Yang, S. J., Berndl, M., Ando, D. M., Barch, M., Narayanaswamy, A. , Christiansen, E., Hoyer, S., Roat, C., Hung, J., Rueden, C. T., Shankar, A., Finkbeiner, S., & and Nelson, P. (2018), "Assessing microscope image focus quality with deep learning", BMC BioInformatics 19(1).
Assuming you already have Apache Maven installed:
mvn -Pexec
Instructions for installing Apache Maven might be
as simple as apt-get install maven
on Ubuntu and brew install maven
on OS X
with homebrew.
See the ImageJ Development page for further details.
If you have Fiji installed and want to incorporate this plugin into your installation:
# Set this to the path there Fiji.app is installed
FIJI_APP_PATH="/Users/me/Desktop/Fiji.app"
mvn -Dimagej.app.directory="${FIJI_APP_PATH}"
Then restart Fiji and search for "quality", or navigate to Plugins › Classification › Microscope Image Focus Quality in the menu.