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filareta / lung-cancer-prediction

Experiments with processing the lung CT scans that are publicly available in the kaggle competition Data Science Bowl 2017. Evaluating different deep neural networks for training a model that helps early cancer detection.
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How to cite your work? How to run the project? Thanks for your help! #2

Open guyucowboy opened 6 years ago

guyucowboy commented 6 years ago

Hi, filareta Thanks for sharing your great work! How to cite your work? How to run the project? Thanks for your help! Best regards Gu Yu

filareta commented 6 years ago

Hi, Thanks for reviewing the project!

Regarding the data set - I have used the data from this competition in Kaggle - https://www.kaggle.com/c/data-science-bowl-2017/data (unfortunately it does not seem to be available anymore due to some restrictions).

I used to keep pre-processed version of the data (since it is quite large) using different approaches for images segmentation, but I have deleted those.

You should be able to run the pre-processing steps yourself using the preprocess_dicoms.py script, you can choose different image segmentation approaches and start a training. There some networks configurations, since I have also made some comparison of the results using different pre-processing steps and different network configurations.

If you manage to find the data set and have some issues running the script, let me know if I can help (since I haven't made any changes in the project for long time :) )

Best regards, Filareta

guyucowboy commented 6 years ago

Hi, filareta Thanks for your help! I have tried to download the codes for many times, but it was always interrupted and then failed due to the network. Could you send me the codes from e-mail? Thanks very much! My e-mail is 664805854@qq.com or guyu2010023@imust.cn Thank you very much! Best regards Gu Yu

filareta commented 6 years ago

Quite strange, I have cloned the project on different machines several times. You can check your git configurations for some limits.

Regards

On Tue, 11 Sep 2018, 05:16 guyucowboy, notifications@github.com wrote:

Hi, filareta Thanks for your help! I have tried to download the codes for many times, but it was always interrupted and then failed due to the network. Could you send me the codes from e-mail? Thanks very much! My e-mail is 664805854@qq.com or guyu2010023@imust.cn Thank you very much! Best regards Gu Yu

— You are receiving this because you commented. Reply to this email directly, view it on GitHub https://github.com/filareta/lung-cancer-prediction/issues/2#issuecomment-420123210, or mute the thread https://github.com/notifications/unsubscribe-auth/AC-U8tIBWvGzc015cVho2_b6ig0JlnYLks5uZxzigaJpZM4WhVml .

guyucowboy commented 6 years ago

Hi, filareta I used github desktop these days. I have tried for many many times but it is always failed at 30%（193/632）. Maybe a big file could not download. Could you help me to send the codes? Thank you very much! Best regards Gu Yu

guyucowboy commented 6 years ago

Hi, filareta Finally, I download your codes -:). I may consult you in the future. Thank you very much! Best regards Gu Yu

filareta commented 6 years ago

Hi, I have been a bit late to reply, excuses for that. Great that you managed to download it :)

Best regards, Filareta

На чт, 13.09.2018 г. в 12:30 ч. guyucowboy notifications@github.com написа:

Hi, filareta Finally, I download your codes -:). I may consult you in the future. Thank you very much! Best regards Gu Yu

— You are receiving this because you commented. Reply to this email directly, view it on GitHub https://github.com/filareta/lung-cancer-prediction/issues/2#issuecomment-420944347, or mute the thread https://github.com/notifications/unsubscribe-auth/AC-U8v5mrL9FUH3Pa7yLxwoM1gPxYPIzks5uaiXBgaJpZM4WhVml .