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firasmidani / amiga

Analysis of Microbial Growth Assays
https://firasmidani.github.io/amiga/
GNU General Public License v3.0
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Usage without regular time intervals #9

Open diefuechsin opened 2 years ago

diefuechsin commented 2 years ago

Hello!

Thanks for providing this tool - I am very interested in using it for analysing my bacterial growth assays.

However, my time intervalls of my bacterial growth assay are not regular. E.g. I have time points at 0h, 4h, 24h, 48h, 52h... AMiGA seems to require as input data regular time intervalls between the OD measurements (e.g. measurements every 2h).

Is it possible to use AMiGA with my data with irregular time intervals between OD600 measurements?

Thank you in advance

firasmidani commented 2 years ago

Thank you for opening this issue.

At the moment, it is not possibly to directly use AMiGA with irregular time intervals. But I have devised a possible solution and it will take me a couple of weeks to implement. I have sat on this for a while because it may require some careful rewriting of the code to avoid any unpredictable bugs.

To make this work, it is probably easiest to allow AMiGA to read the time interval directly from the data file, so I am referencing this issue to another one that I just opened. See issue #10. I will keep you updated there.

diefuechsin commented 2 years ago

Thank you very much for your answer!