Analysis of Microbial Growth Assays is a user-friendly program for analysis of high-throughput microbial growth assays using Gaussian Process regression. Users can interact with AMiGA via a command-line interface.
See documentation for tutorials, technical details, and examples.
See Installation for instructions and requirements.
This project is covered under the GPL-3 license.
See CHANGELOG for more details of changes and updates.
2021-04-22
Major structural and aesthetic changes to amiga with new features.
2020-11-04
Improvements to differential testing of growth.
2020-08-26
Structural changes and more functions: e.g. heatmaps, time-dependent noise, pooling of replicates.
2020-06-10
Improvements to how AMiGA stores and exports model-predicted growth data and growth derivative.
2020-04-25
The main driver script is now amiga.py. Please do not use main.py.
Please post issues here.
FS Midani, J Collins, and RA Britton.
AMiGA: software for automated analysis of microbial growth assays.
mSystems (2021). https://doi.org/10.1128/mSystems.00508-21
To reproduce analysis and figures in the manuscript, see Manuscript README.