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flatironinstitute
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catvae
Categorical Variational Autoencoders
BSD 3-Clause "New" or "Revised" License
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using catvae without a phylogeny
#75
cameronmartino
closed
2 years ago
8
advice for using catvae in a new contexts
#74
taylorreiter
opened
2 years ago
3
Update main.yml
#73
mortonjt
closed
2 years ago
0
Readme utils
#72
mortonjt
closed
3 years ago
1
Batch gamma prior wo sigmanet
#71
mortonjt
closed
3 years ago
1
Sample dispersion
#70
mortonjt
closed
3 years ago
2
Overdispersion flag
#69
mortonjt
closed
3 years ago
1
Batch gamma prior
#68
mortonjt
closed
3 years ago
2
Batch specific overdispersion
#67
mortonjt
closed
3 years ago
1
Adding per-dimension over-dispersion terms
#66
mortonjt
closed
3 years ago
1
Add batch classifiers
#65
mortonjt
closed
3 years ago
1
Decoupling batch weights
#64
mortonjt
closed
3 years ago
0
adding sampling
#63
mortonjt
closed
3 years ago
0
Batch decouple
#62
mortonjt
closed
3 years ago
0
Adding in Readme
#61
mortonjt
closed
3 years ago
0
Batch correction as a fine-tuning procedure
#60
mortonjt
closed
3 years ago
1
Enabling batch finetuning
#59
mortonjt
closed
3 years ago
0
Boolean CLI flags are broken (again)
#58
mortonjt
closed
3 years ago
0
Training speed
#57
mortonjt
opened
3 years ago
0
updating dependencies
#56
mortonjt
closed
3 years ago
0
Update main.yml
#55
mortonjt
closed
3 years ago
0
Support for R
#54
mortonjt
opened
3 years ago
0
WIP : Triplet nets
#53
mortonjt
closed
3 years ago
0
Updating jupyter notebooks
#52
mortonjt
closed
3 years ago
0
CLI tests
#51
mortonjt
closed
3 years ago
1
ENH: add testing split validation
#50
mortonjt
closed
3 years ago
0
ENH: support for hypothesis testing
#49
mortonjt
opened
3 years ago
0
ENH: add support for fine-tuning
#48
mortonjt
closed
3 years ago
0
Regression tests
#47
mortonjt
closed
3 years ago
1
INF: Enable both GPU and CPU computation
#46
mortonjt
closed
3 years ago
0
qiime2 plugin
#45
mortonjt
opened
3 years ago
0
flake8 test
#44
mortonjt
closed
3 years ago
1
Pushing travis
#43
mortonjt
closed
3 years ago
0
INF : Regression tests
#42
mortonjt
closed
3 years ago
1
Adding arcsine option
#41
mortonjt
closed
3 years ago
1
Change name to MMvec2
#40
mortonjt
opened
3 years ago
0
Passing in batch priors as ILR coordinates
#39
mortonjt
closed
3 years ago
1
Specifying priors
#38
mortonjt
closed
3 years ago
1
fixing typos in scheduler and variances
#37
mortonjt
closed
3 years ago
0
Batch cavi
#36
mortonjt
closed
3 years ago
0
Batch priors
#35
mortonjt
closed
3 years ago
1
Sample
#34
mortonjt
closed
3 years ago
0
adding stan finetuning script
#33
mortonjt
closed
4 years ago
0
adding ctm parser
#32
mortonjt
closed
4 years ago
1
Add CTM
#31
mortonjt
closed
3 years ago
1
Multinomial logistic normal estimation
#30
mortonjt
closed
3 years ago
1
adding confounder dataset
#29
mortonjt
closed
3 years ago
0
INF: Checkpoints
#28
mortonjt
closed
3 years ago
1
Simulations tests
#27
mortonjt
closed
3 years ago
1
WIP : Batch correction
#26
mortonjt
closed
4 years ago
2
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