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flatironinstitute
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inferelator
Task-based gene regulatory network inference using single-cell or bulk gene expression data conditioned on a prior network.
BSD 2-Clause "Simplified" License
47
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bulk RNA-Seq and ATAC-Seq
#69
rodongo
opened
3 months ago
0
ConditionDoesNotExistError: Unable to align metadata to expression data
#68
zscooper
closed
10 months ago
2
Running StARS LASSO without TFA?
#67
OceaneCsn
closed
1 year ago
2
AttributeError: 'NoneType' object has no attribute 'columns'
#66
amini-sahand
opened
1 year ago
5
Multitask multigene
#65
asistradition
closed
4 months ago
1
Inferelator workflow for subsetted Seurat .h5ad file
#64
jsacco1
opened
1 year ago
1
Attribute error in InferelatorRegressWorkflow when calling cv wrap
#63
jsacco1
opened
1 year ago
1
Query Regarding Retrieval of Final GRN with Confidence Scores Ranging 0 to 1
#62
TheChenSu
opened
1 year ago
1
Multitask multigene
#61
asistradition
closed
1 year ago
1
problem with the format of priors input file
#60
ramandeepkaur0303
opened
1 year ago
1
v0.6.1
#59
asistradition
closed
1 year ago
1
Multi-gene tasks & Velocity (v0.6.0)
#58
asistradition
closed
2 years ago
0
Time series
#57
torgeihv
closed
1 year ago
1
shuffle_prior_axis
#56
torgeihv
closed
1 year ago
7
Metadata format
#55
poorvam
closed
2 years ago
1
Prior connectivity matrix
#54
poorvam
closed
2 years ago
1
Dev v0.5.9
#53
asistradition
closed
2 years ago
1
Bring release changes over to dev
#52
asistradition
closed
2 years ago
0
Arguments for BBSR model
#51
frankligy
closed
1 year ago
3
Fix for issue #49
#50
spficklin
closed
2 years ago
1
Unhashable type: 'Index'
#49
spficklin
closed
2 years ago
3
v0.5.7
#48
asistradition
closed
3 years ago
1
Numba
#47
asistradition
closed
3 years ago
1
Performance improvements
#46
bgorissen
closed
3 years ago
9
v0.5.6
#45
asistradition
closed
3 years ago
1
Result object (why max recall is not 1?)
#44
frankligy
closed
1 year ago
1
New testing & CI
#43
asistradition
closed
3 years ago
0
gene has to contain regulator?
#42
frankligy
closed
1 year ago
4
v0.5.5
#41
asistradition
closed
3 years ago
0
v0.5.4
#40
asistradition
closed
3 years ago
0
reproduce network from paper
#39
koenvandenberge
closed
3 years ago
4
v0.5.3
#38
asistradition
closed
3 years ago
0
TFA workflow output error on MacOS
#37
IcyFermion
closed
3 years ago
4
Is it possible to run it only with expression and metadata?
#36
josruirod
closed
1 year ago
2
Final v0.5.2
#35
asistradition
closed
3 years ago
0
v0.5.2
#34
asistradition
closed
3 years ago
0
Inquiry regarding the Settings of Hyper-parameters
#33
sap01
closed
3 years ago
2
v0.5.2
#32
asistradition
closed
3 years ago
0
Fix dev split
#31
asistradition
closed
3 years ago
0
v0.5.0
#30
asistradition
closed
4 years ago
0
Adding MCC metric.
#29
Xparx
closed
4 years ago
0
Velocity inference
#28
asistradition
closed
4 years ago
0
Updating the dask code to scale properly & use extra cores on the job scheduler for processing
#27
asistradition
closed
4 years ago
0
Dev
#26
gs512
closed
4 years ago
0
single_cell_cv_workflow to single_cell_workflow
#25
moqri
closed
4 years ago
0
Expression data normalization
#24
vvelasqz
closed
1 year ago
1
Lasso-stars dask
#23
asistradition
closed
4 years ago
0
Inferelator v0.4.0
#22
asistradition
closed
4 years ago
0
i
#21
lichan-upup
closed
4 years ago
1
Data wrapper
#20
asistradition
closed
4 years ago
0
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