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flekschas / enhancer-gene-vis

A tool for visualizing ABC enhancer-gene connections in the context of genetic variants.
https://flekschas.github.io/enhancer-gene-vis
Apache License 2.0
12 stars 4 forks source link
enhancer-gene enhancers variants visualization

readme

ABC Enhancer-Gene Visualization

**A tool for visually exploring ABC enhancer-gene connections across biosamples in the context of genetic variants**


![User Interface](https://user-images.githubusercontent.com/932103/108857083-b40b3e00-75b8-11eb-88aa-0ff00c4bb8bc.png)

Website: https://flekschas.github.io/enhancer-gene-vis

Paper: Nasser et al., "Genome-wide enhancer maps link risk variants to disease genes", Nature, 2021.

This web-based visualization provides access to genome-wide ABC enhancer-gene connections across 131 biosamples and allows you to correlated the enhancers with genetic variants.

How?

Coming Soon! Meanwhile please read the introduction.

Development

Setting up a development environment

#### Installation ```bash $ git clone https://github.com/flekschas/enhancer-gene-vis && enhancer-gene-vis $ npm install ``` #### Commands **Developmental server**: `npm start` **Production build**: `npm run build` **Demo build**: `npm run build-demo`