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fmi-faim / fmi-ij2-plugins

A collection of ImageJ2 plugins for use with KNIME
GNU Lesser General Public License v3.0
7 stars 3 forks source link
bio-image-analysis image-processing imagej knime

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fmi-ij2-plugins

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Installation in KNIME

To use these plugins in KNIME, please activate the update site https://community.knime.org/download/ch.fmi.knime.plugins.update/ as well as the KNIME Image Processing Nightly Builds.

Manual installation in KNIME

If you want to install this plugin manually via the KNIME ImageJ2 integration, you'll have to install the fmi-ij2-plugins jar file as well as all the dependencies listed below.

  1. Install fmi-ij2-plugins.jar from the latest release via File > Preferences into KNIME > Image Processing Plugin > ImageJ2 Plugin Installation.

  2. The following additional files (dependencies) are required:

Project Download jar from maven.imagej.net
AnalyzeSkeleton_ AnalyzeSkeleton_-3.4.2.jar
Descriptor_based_registration Descriptor_based_registration-2.1.7.jar
Fiji_Plugins Fiji_Plugins-3.1.1.jar
fmi-trackmate-addons fmi-trackmate-addons-0.1.2.jar
guava guava-21.0.jar
jdom2 jdom2-2.0.6.jar
jgrapht-core jgrapht-core-1.4.0.jar
jts-core jts-core-1.18.1.jar
legacy-imglib1 legacy-imglib1-1.1.9.jar
mpicbg mpicbg-1.4.1.jar
SPIM_Registration SPIM_Registration-5.0.21.jar
TrackMate_ TrackMate_-6.0.1.jar
TrackMate_extras TrackMate_extras-0.0.4.jar