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fmi-faim
/
napari-psf-analysis
A napari plugin to analysis point spread functions.
https://fmi-faim.github.io/napari-psf-analysis/
BSD 3-Clause "New" or "Revised" License
8
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3
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matplotlib >= 3.9 leads to rendering issue of the summary plot
#60
tibuch
opened
2 weeks ago
0
Fix typo in README
#59
ehrenfeu
closed
4 months ago
1
Min Python requirement set to 3.9. Update test to run on 3.9, 3.10, a…
#58
tibuch
closed
5 months ago
0
Drop Python 3.8 support
#57
tibuch
closed
5 months ago
0
Use `int` instead of `float` for progress bar update
#56
imagejan
closed
5 months ago
1
TypeError on progress bar update
#55
imagejan
closed
5 months ago
0
error: "NapariReader" object has no attribute "copy"
#54
Lplantard
closed
10 months ago
1
Add SNR criterion
#53
tibuch
opened
11 months ago
0
Remove default pixel size
#52
tibuch
opened
11 months ago
0
A bug for my first try
#51
pierre-weiss
closed
11 months ago
4
Fix save and delete
#50
tibuch
closed
11 months ago
0
Multiple (possibly connected) issues
#49
tibuch
closed
11 months ago
0
[pre-commit.ci] pre-commit autoupdate
#48
pre-commit-ci[bot]
opened
1 year ago
1
Refactor
#47
tibuch
closed
1 year ago
2
[pre-commit.ci] pre-commit autoupdate
#46
pre-commit-ci[bot]
closed
1 year ago
1
[pre-commit.ci] pre-commit autoupdate
#45
pre-commit-ci[bot]
closed
1 year ago
1
Check if results are available.
#44
tibuch
closed
1 year ago
2
object not subscriptable
#43
Lplantard
closed
1 year ago
0
Add cancel button
#42
tibuch
closed
1 year ago
0
Improve UI design
#41
tibuch
closed
1 year ago
0
Add tooltips
#40
tibuch
closed
1 year ago
0
[pre-commit.ci] pre-commit autoupdate
#39
pre-commit-ci[bot]
closed
1 year ago
1
cannot convert float NaN to integer
#38
Lplantard
closed
1 year ago
0
Fix 35 and 36
#37
tibuch
closed
1 year ago
1
PSF size indicators in bottom left (ZX) plot are off
#36
tibuch
closed
1 year ago
0
Use fweights in cov computation
#35
tibuch
closed
1 year ago
0
[pre-commit.ci] pre-commit autoupdate
#34
pre-commit-ci[bot]
closed
1 year ago
1
Rework PSF fitting and reporting.
#33
tibuch
closed
1 year ago
1
Set 2D (X/Y) + 1D (Z) Fit as default
#32
lgelman
closed
1 year ago
0
Bounding box should be larger in Z than X,Y
#31
lgelman
closed
1 year ago
0
X, Y and Z coordinates should be relative to the image not the PSF bounding box
#30
tibuch
closed
1 year ago
0
Fit parameters in 3D and their projecttion may have been swapped
#29
lgelman
closed
1 year ago
0
[pre-commit.ci] pre-commit autoupdate
#28
pre-commit-ci[bot]
closed
1 year ago
2
FWHM_X_2D and FWHM_Y_2D not loaded in AirTable
#27
lgelman
closed
1 year ago
0
1D Gaussian fit in Z
#26
tibuch
closed
1 year ago
0
Plugin error when extracting PSFs too close together
#25
clairemitchell308
opened
1 year ago
1
Fix UI blocking if all points get discarded.
#24
tibuch
closed
1 year ago
0
UI stays blocked if all beads are discarded.
#23
tibuch
closed
1 year ago
1
Improve fit robustness and UI responsivness
#22
tibuch
closed
1 year ago
1
Cannot convert float NaN to integer
#21
Lplantard
closed
1 year ago
1
Fix fitting issues
#20
tibuch
closed
1 year ago
3
Error Message: "can't convert float NaNto integer"
#19
miguelpavaodelgado
closed
1 year ago
1
Error Message: "Optimal parameters not found"
#18
lgelman
closed
1 year ago
15
Feed-back message when files/results have been save
#17
lgelman
closed
1 year ago
0
Add 2D PSF fit
#16
tibuch
closed
2 years ago
1
Gaussian fitting in 1D seems to give too large values
#15
lgelman
closed
2 years ago
3
Get image parameters from metadata
#14
tibuch
opened
2 years ago
0
PCA Z and X seem swapped
#13
Lplantard
closed
1 year ago
0
PSF box size configurable
#12
lgelman
closed
1 year ago
0
Fix loading stk from bfio reader.
#11
tibuch
closed
2 years ago
0
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