OCTant

OCTant is a suite of tools for OCT analysis in Python.

Prior to v0.3, OCTant was known as OCT-tools.

Documentation available at: readthedocs

Currently, the following operations are supported:

• Flattening: Corrects retinal curvature using a plynomial fit to reflective RPE layer.
• Stitching / Mosaicing: Permits stitching together several retinal images (usually taken at different angles) to create a larger retinal image
• Profiling: This is automatically "tracked". The intensity profile of the scan is reproduced "side by side" to the scan
• Segmentation: A very naive retinal layers segmentation algorithm (with let's be honest, still very disappointing performance). We hope to improve this soon.
• (Manual) Edit segmentation: Still rudimentary, but some operations to manually edit a segmentation whether by class of interest (COI) or region of interest (ROI).

Dependencies

• The basic scientific libraries; numpy, scipy, matplotlib
• scikit-image
• OpenCV (for pyhton); that's cv2
• PyQt5 (Qt for python for the GUI). Note that sip is "installed" separatedly
• deprecation
• imutils
• panorama

Installer is generated using pynsist.